Micro Exam 3 – Flashcards

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the genome in bacteria is a?
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single, closed loop of double stranded DNA
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the genome is held together by?
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hydrogen bonds
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hydrogen bonds holding the genomes occur in only what pairs?
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AT
-or-
CG
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a gene is a?
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segment of DNA, (a sequence of nucleotides)
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genes code for?
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a functional product, usually a protein
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when a gene is expressed
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DNA is transcribed to prduce RNA

mRNA is then translated into proteins
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the DNA in a cell does _____ before division?
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duplicates, so that each daughter cell receives the same genetic material
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during replication the two strands of DNA separate at the ______
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replication fork
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during replication each strand is used as a template by DNA polymerase to synthesize?
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two new strands of DNA

(rule of nitrogenous base pairing)
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DNA can only be replicated in what direction?
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the 5-->3 direction
this means one strand is coded continuously and the other is coded discontinuously
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another name for the replication process
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semiconservative
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semiconcervative
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names so because each new double-stranded DNA molecule contains one original and one new complementary strand
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in replication each daughter bacterium receives?
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a chromosome that is virtually identical to the parents
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during transcription, the enzyme RNA polymerase?
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synthesizes a strand of R?NA from one strand of the double stranded DNA that serves as a template
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RNA is synthesize in what direction
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5-->3

same as DNA
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the process in which the information in the nucleotide base sequence of mRNA is used to dictate the amino acid sequence of a protein
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translation
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the mRNA associates with
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ribosomes, which consist of rRNA and protein
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three-base segments of mRNA that specify amino acids are called?
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codons
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why is the genetic code in translation degenerate
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most amino acids are coded for by more that one codon(three-base segment of mRNA)
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how many sense codons

how many non-sense codons(stop codons)
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61

3
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specific amino acids are attached to?
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molecules of tRNA
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the anti-codon is located on what
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tRNA
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the base pairing of codon and anticodon at the ribosome results in what?
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specific amino acids being brought to the site of protein synthesis
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the ribosome moves along the mRNA strand as amino acids are joined to form ____?
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a growing polypeptide
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in prokaryotes, translation can begin before___?
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transcription is complete
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in the regulation of bacterial gene expression, the regulation of protein synthesis at the gene level is energy efficient because
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proteins are synthesized only as needed
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in the regulation of bacterial gene expression constitutive enzymes are produced?
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continually by the cell,
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a series of enzymes which are produced at the same time because they are all used fro the same pathway
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operon
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this controls the synthesis of one or several repressible enzymes in the regulation of bacterial gene expression
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repression
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when cells are exposed to a particular end-product during repression this happens?
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synthesis of enzymes related to that product decreases.
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the process by which certain chemicals (inducers) trigger the cell to synthesize more enyzmes
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induction
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example of induction
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lactose is an inducer of B-galactosidase in E. coli which enables the bacteria to metabolize lactose
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permanent changes in genome is known as what?
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mutation
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mutations may be?
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spontaneous or induced
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type of mutation that comes from a single base change and may be missense, nonsense,or silent mutations
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point mutations
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transfer of DNA between bacteria can occur by what processes
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conjugation, transformation, and transduction
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the use of microorganisms, celss, or cell components to make a product such as foods, antibiotics, vitamins, or enzymes.
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biotechnology
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DNA that has bwen artificially manipulated to combine genes from two different sources
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recombinant DNA
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the insertion or modification of genes to produce desired proteins
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recombinant DNA technology
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in recombinant DNA technology a desired gene is inserted into a?
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DNA vector, such as a plasmid or a viral genome.
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the vector inserts what?
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DNA into a new cell, which is grown to form a clone.
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in recombinant DNA technology large quantities of the gene product can?
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be harvested from the clone
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tools of biotechnology:

selection
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microbes with desirable traits are selected for culturing by artificial selection
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tools of biotechnology:

mutation
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mutagens are used to cause mutations that might result in a microbe with desirable traits.
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tools of biotechnology:

site directed mutagenesis
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used to change a specific codon in a gene
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tools of biotechnology:

restriction enzymes
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restriction enzymes recognize and cut only one particular nucleotide sequence in DNA
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some restriction enzymes produce?
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sticky ends, (short stretches of single0stranded DNA at the ends of the DNA fragments.)
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fragments of DNA produced by the restriction enzyme will?
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spontaneously join by base pairing, and DNA ligase can covalently link the DNA backbones.
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plasmids that can exist in several different species
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shuttle vectors
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a plasmid containing a new gene can be inserted into a cell using a shuttle vector by what process?
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transformation
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a virus containing a new gene can insert the gene into a cell using what?
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shuttle vector
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used to make multiple copies of a desired pieces of DNA enzymatically
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polymeraze chain reaction
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made by cutting up an entire genome with restriction enzymes and inserting the fragments into bacterial plasmids of phages
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gene libraries
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what kind of DNA can by cloned in gene libraries
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complementary DNA (cDNA) made from mRNA by reverse transcriptase
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uses to make in vitro synthetic DNA
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synthesis machine
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used to introduce a new gene into a cloning host
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vectors
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e coli or accharomyces cerevisiae are often used to produce proteins by recombinant DNA why?
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because they easily grow and their genomics are well known. the cells are usually lysed to recover the protein.
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cloned DNA is used to?
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produce products, study the cloned DNA, and alter the phenotype of an organism
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therapeutic applications of recombinant DNA technology
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insulin, subunit vaccines, DNA vaccines, gene therapy, and the human genome project
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destruction of all microbial life
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sterilization
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destruction or removal of vegetative pathogens from inert surfaces
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disinfection
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destruction or inhibition of vegetative pathogens on living tissue
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antisepsis
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a chemical that destroys bacteria
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bacteriocide
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agents that inhibit or prevent the growth of bacteria
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bacteriostatic
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removal of microorganisms to "safe level of standards"
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decontamination
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actions of mecrobial control agents
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affecting cell wall synthesis

alternation of membrane permeability

damage to proteins

damage to nucleic acids
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dry heat
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dry heat sterilization kills by oxidation
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example of dry heat
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incenteration, dry ovens use hot air sterilization
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moist heat
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denatures proteins and DNA whil destroying membranes
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example of moist heat
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autoclave, steam under pressure.
for steam sterilization to work the steam must contact items surface
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example of moist heat
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pasturization, reduces spoilage organisms and pathogens, but does not sterilize.
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low temperature
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inhibits microbial growth
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filtration
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removes microbes from liquids and gases
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radiation
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damages DNA
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ionizing radiation (X-rays, gamma rays, electron beams) produces?
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highly reactive hydroxyl radical which damage DNA
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NONIONIZING RADIATION (uv) does what?
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produces thymine dimes in DNA
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chemical methods of microbial control
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phenolics

alcohols

oxidizers

heavy metals

surfactants

alkylators
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the first antiseptic used in surgery
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phenol
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disrupts plasma membranes, and precipitates proteins
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lysol
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surfactant and protein denaturant
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chlorhexidine
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dissolve membrane lipids and coagulate proteins
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alcohols

ethyl and isopropyl
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hydrogen peroxide,iodine, and chlorine
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strong oxidizers
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Ag, Hg, an Cu oligodynamic action, denatures proteins
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heavy metals
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quaternary ammonium compounds that disrupt plasma membranes
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surfactants
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glutaraldehyde, formaldehyd, and ethylene oxide alkylate proteins and DNA
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alkylators
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a gas sterilizer that requires a long exposure time to be effective
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ethylene oxide (alkylator)
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the use of drugs to treat a disease
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chemotherapy
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drugs that interfere with the growth of microbes within a host
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antimicrobial drugs
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a substance produced by a microbe that, in small amounts, inhibits another microbe.
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antibiotics
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a drug that kills harmful microbes without damaging the host
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selective toxicity
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kills microorganisms directly
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bacteriocidal
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prevents microorganisms from growing
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bacteriostatic
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this dude descovered penicillin in 1928 by using penicillium
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fleming
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these dudes performed the first clinical trials of penicillin in 1940
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howard florey and ernst chain
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inhibitors of cell wall synthesis:
peptidoglycan biosynthesis
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phosphomycin, d-cycloserine
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inhibitors of cell wall synthesis:
lipid carrier inhibitors
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vancomycin, bacitracin
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inhibitors of cell wall synthesis:
B-lactams(penicllins and cephalosporins)
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prevent cross-linking of peptidoglycan in actively growing cells, but have little toxicity for human cells which do not make peptidoglycan
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penicilin and related antibiotics are susceptible to?
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penicillinases
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injury to the plasma membrane:
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polymyxin B injures the plasma membranes of bacteria, but can only be used topically due to toxicity
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inhibitors of nucleic acid synthesis:
quinolones and fluoroquinolones(ciprofloxacin)
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this inhibits replication of DNA by inhibiting the enzyme DNA gyrase
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inhibitors of nucleic acid synthesis:
rifamycins(rifampin)
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inhibits the synthesis of mRNA
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inhibitors of protein synthesis:
oxazolidones(linezolid)
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this binds to the 50s subunit of ribosome and prevent initiation of protein synthesis
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inhibitors of protein synthesis:
aminoglycosides(streptomycin, neomycin)
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inhibits protein synthesis by binding to the 30s portion of the ribosome, changing its shape, and causing the mRNA to be read incorrectly.
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inhibitors of protein syntheis:
tetracyclines
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inhibit protein synthesis by interfering with attachment of tRNA to the mRNA ribosome complex
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inhibitors of protein synthesis:
chloramphenicol
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inhibits protein synthesis by binding to the 50s portion of the ribosome and inhibits formation of the peptide bond
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inhibitors of protein synthesis:
macrolides(erythromycin)
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inhibits protein synthesis by binding to the 50s portion of the ribosome and preventing translocation
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the movement of the ribosome along the mRNA
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translocation
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competitive inhibitors of the synthesis of essential metabolites:
sulfonamides and trimethoprim
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these competitively inhibit the conversion of para-aminobenzoic acid, a precursor of folic acid which is critical in the synthesis of DNA,RNA, and protein.
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when to things work together to make a result greater than either one could make alone

1+1=3
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synergism
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inhibitors of cell wall synthesis:
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peptidoglycan biosynthesis

lipid carrier inhibitors

b-lactams
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inhibitors of nucleic acid:
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quinolones

rifamycins
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inhibitors of protein synthesis:
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oxazolidones

aminoglycosides

tetracyclines

chloramphenicol

macrolides
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competitive inhibitors of synthesis of essential metabolites:
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sulfonamides

trimethoprim
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