Exam 3 Biochem-Lecture 34 – Flashcards

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What are purines and pyrimidines?
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Purines and pyrimidines, often called bases, are nitrogen-containing heterocyclic compounds.

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Purine bases you will find in DNA are
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  • Adenine
  • Guanine
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Pyrimidines have a single .......sided ring structure.

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Pyrimidines have a single six sided ring structure.

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   Example of Pyrimidines base
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Uracil is found in RNA.

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 The purine NSs  end in 
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"-sine"
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The pyrimidine NSs end in
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"-dine"
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To name the NTs:
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  • use the NS name
  •  followed by "mono-", "di-"
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NMP means
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Nucleotide monophosphate

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NDP means
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Nucleotide diphosphate

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NTP means
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Nucleotide triphosphate

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Functions of Nucleotides
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nEnergy metabolism
nMonomeric units of nucleic acids
nPhysiological mediators
nPrecursor function
nComponents of coenzymes
nActivated intermediates
nAllosteric effectors

 

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Nucleotides are  components of coenzymes:
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  • Coenzyme A
  •  FAD
  • NAD+
  • NADP+
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Nucleotide activate intermediates like:
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  • SAM (AdoMet)
  •  CDP-choline (phospholipids)
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Why is purine salvage pathway of metabolism of purine  important?

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  • Because free purines are somewhat toxic.
The salvage pathway decreases the levels of PRPP, and therefore decreases the rate 
  • The salvage pathway decreases the levels of PRPP, and therefore decreases the rate 
of purine synthesis. This is an important regulatory mechanism for purine metabolism.

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Synthesis of purines requires
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nAmino acids
¨Glycine
¨Glutamine (2)
¨Aspartate
nCO2   
nOne carbon units transferred via THF (2)
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GOUT is a disorder characterized by:
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high levels of uric acid in blood, as a result of either the overproduction or under excretion of uric acid.
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nGout is treated with drug such as
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allopurinol  that inhibit xanthineoxidase
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CPS I has:
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  • Mitochondria
  • Urea Cycle
  • Ammonia
  • Activator:N-acetyl-glutamate
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              CPS II

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 Cytosol

Pyrimidine Synthesis
g-amide group of glutamine
Activator:ATP
Inhibitor:UTP
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Source of carbon and nitrogen on pyrimidines are
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  • 1,4,5,6 from ASparate
  • 2 from HCO3-
  • 3 from Glutamine amide
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Source of carbon and nitrogen atoms in purine ring
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1 from Asparate amine

2 from C1-H4folate

3 from Glutamine amide

4, 5,7 from Glycine

8 from C1 H4folate

9 from Glutamine amide 

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In de novo synthesis, the pyrimidine ring is synthesized from

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  • bicarbonate
  • aspartate
  • glutamine (or ammonium ion).
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Synthesis of pyrimidines vs. purines.
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nFirst, the ring structure is assembled as a free base in pyrimidines, not built upon PRPP like purines.

nSecond, there is no branch in the pyrimidine synthesis pathway.
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In Synthesis of Pyrimidine Nucleotides, what is regulated step?

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 Carbamoyl phosphate

   Synthetase II

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In Synthesis of Pyrimidine Nucleotides, committed step involves which enzyme?

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Carbamoylaspartate
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The regulatory step in  Synthesis of Pyrimidine

Nucleotides involves which enzyme?

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  • Carbamoyl phosphate
  • aspartate
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Regulation of Purine Synthesis
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Inactivate Purine + PRPP----> Active Purine

Activate Purine + IMP/GMP/IMP---> Inactivate Purine

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Inactivate Purine + ????----> Active Purine

 

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PRPP
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Activate Purine +????---> Inactivate Purine
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 IMP/GMP/IMP
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Metabolism of Purine Nucleotides include:
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nSynthesis of purine nucleotides
nPurine salvage
nPurine nucleotide interconversions
nGTP and tetrahydobiopterin
nUric acid
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