Cancer Genetics — Exam 3 – Flashcards

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What is cancer?
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A collection of disorders that share the common feature of uncontrolled cell growth.
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What is required for cells to become cancerous?
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They must become resistant to signals that normally inhibit cell growth.
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Neoplasm/tumor
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Mass of cells due to uncontrolled cell growth
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Tumorigenesis
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Formation of tumors
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Angiogenesis
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Formation of new blood vessels
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Malignant
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A tumor that invades nearby tissues
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Metastasis
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Tumor spread to distant body sites
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Benign
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Tumor that does not invade tissue or metastasize
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The process of carcinogenesis (5 steps)
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1) Cells become resistant to signals that normally inhibit growth 2) Cells disable apoptosis 3) A new blood supply is obtained through angiogenesis to nourish the tumor 4) Cancer cells override other inhibitory signals to become malignant 5) One malignant, the tumor may metastasize to distant body parts
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Carcinoma
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Cancer of epithelial tissue
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Sarcoma
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Cancer of connective tissue
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Lymphoma
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Cancer of lymphatic tissue
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Glioma
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Cancer of glial cells
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Leukemia
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Cancer of hematopoietic organs
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All cancer is ________, but mutation rates and effects can be modified through ________________ factors
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Genetic, environmental
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The incidence of colon cancer among the Japanese is 0.5% but colon cancer in Japanese-Americans is 5%. Why?
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Different environmental exposures leads to different cancer risks in genetically similar populations. The environmental factor that likely explains this example is because Americans eat such a high fat, low fiber diet.
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Growth factors
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Transmit signals from cell to cell. Eg. platelet-derived growth factor, epidermal growth factor, steroid hormones
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Growth factor receptors
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These receptors are on the cell surface, and they bind to growth factors
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Signal transduction molecules
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These molecules activate a chain of phosphorylating reactions in the cell, targeting and altering the activity of different proteins within the cell to communicate with the cell nucleus
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Nuclear transcription factors
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These factors are in the nucleus and they regulate DNA transcription by interpreting signals to grow, stop growing, and differentiate
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The process of cellular regulation (4 steps)
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1) External growth factors (proteins and steroid hormones such as epidermal growth factor) bind to *membrane-spanning* growth factor receptors on the cell surface 2) This activates signal-transduction pathways in which genes such as RAS participate. 3) Components of the signal-transduction pathway in turn interact with nuclear transcription factors, such as MYC and FOS. 4) These nuclear transcription factors bind to regulatory regions in DNA.
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Knudson's two-hit hypothesis
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Cancer is the result of accumulated mutations to a cell's DNA.
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Two different ways to achieve the two-hit hypothesis
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Inherited vs. sporadic cancer
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Two-hit hypothesis: inherited cancer
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1st hit: The first mutation is already present in the germline (one mutated chromosome copy in either the sperm or egg). 2nd hit: The second mutation is somatic. Tumor development.
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Two-hit hypothesis: sporadic cancer
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1st hit: The first hit occurs in the embryo; the first mutation is somatic, not inherited. 2nd hit: The second mutation is somatic. Tumor development.
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3 Types of cancer genes
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Tumor suppressor genes Oncogenes DNA repair genes
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Tumor suppressor genes
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Control cell division to *prevent* tumors. Regulates cell growth and proliferation. Some can induce apoptosis. These genes normally block uncontrolled cell growth by participating in pathways that regulate the cell cycle, regulating transcription, or regulating cell-cell interactions.
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How do tumor suppressor genes cause cancer?
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Loss of function. Mutations in these genes typically disable the gene.
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Can heterozygous mutated tumor suppressor genes cause cancer/is a 2nd hit required?
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No. Incomplete penetrance. Recessive.
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Example of a tumor suppressor gene cancer?
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Retinoblastoma (RB1)
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How does the RB1 gene work?
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1) RB1 encodes the protein pRb. pRb is active when unphosphorylated and it binds to the E2F transcription complex and inactivates it, which halts the cell cycle. 2) When pRb is phosphorylated, it is inactivated and released, so the cell cycle is reactivated.
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How does a mutation in the RB1 gene cause cancer?
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A mutation in RB1 can result in permanent inactivation so that there is no brake on the cell cycle, leading to uncontrolled cell division.
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Oncogenes
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Activate cell growth. Promotes cell growth and proliferation. Originate from proto-oncogenes which are involved in regulation of normal cell growth.
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How do oncogenes cause cancer?
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Gain of function. Mutations lead to an excessively active product that leads to unregulated cell growth and differentiation.
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Can heterozygous mutated oncogene cause cancer/is a 2nd hit required?
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Yes. Only a single copy of a mutated gene is required to contribute to the process of tumor progression. Dominant.
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Are oncogene cancers typically seen in sporadic or hereditary cancers?
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Sporadic
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Example of an oncogene cancer?
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HER2/NEU; an invasive breast cancer
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Oncogenes are amplified in what percentage of invasive breast cancers?
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20-30% Associated with aggressive cancer.
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How does the drug trastuzumab downregulate oncogene invasive breast cancer?
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Protein product is a growth factor receptor on the surface of breast cancer cells. Trastuzumab binds to this amplified gene product, downregulating it.
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Which is more likely to harbor a germline mutation (inherited mutation), oncogenes or tumor suppressor genes?
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Tumor suppressor genes
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Tumor cells exhibit what type of genomic instability? (4 ways)
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Multiple mutations Hypomethylation Chromosome breaks Aneuploidy
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What causes this genomic instability?
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Defects in proteins required for accurate cell division or DNA repair.
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What causes those protein defects?
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Sporadic mutations, mostly
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Why is the genomic instability in the tumor cells bad?
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It can activate oncogenes or deactivate tumor suppressor genes.
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How many times can a cell divide before it hits its limit?
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50-70 divisions (all cells)
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Why is a cell limited as to how many times it can divide?
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With each division, the telomeres shorten and DNA polymerase cannot replicate the tips of the chromosomes. Once the telomere is reduced to a critical length, a signal is transmitted that causes it to no longer divide.
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How do tumor cells overcome the limit on cell division?
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Activating a gene called telomerase that replace the telomeric segments lost during cell division.
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Telomerase is found in _____% of tumor cells
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80-90%
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What does telomerase allow the cell to do?
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Uninhibited cell division and accumulation of additional mutations that can make the tumor cell more aggressive.
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What percentage of all people will be diagnosed with cancer at some point in their lives?
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50%
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What percentage of deaths are due to cancer?
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25%
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Why are cancers increasing in incidence?
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Mainly as a result of the increasing age of the population over time
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What percentage of cancers are hereditary/inherited?
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5-10%
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What percentage of cancers are familial?
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10-15%
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What percentage of cancers are sporadic?
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75-85%
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Why should practitioners be cautious with using family history to assess cancer risk?
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Often unrealiable. Most patients don't know the details: specific tumor sites, age of onset, even specific cancer types. Historical information needs to be verified in order to accurately assess risk.
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Why should practitioners update family histories?
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With the passage of time, additional diagnoses are made; can affect likelihood of a hereditary cancer syndrome.
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Sporadic cancer characteristics
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Later age of onset (60s-70s) Little to no family history of cancer Single or unilateral tumors
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Inherited cancer characteristics
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Early age of onset (;50) Multiple generations with cancer Clustering of certain cancers
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Why do autosomal dominant cancers appear to skip generations?
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Penetrance is often incomplete; individuals inherit the altered cancer susceptibility gene, not cancer. (Need that 2nd hit)
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Approximate lifetime colorectal cancer risk with Lynch syndrome?
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70%-78%
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HNPCC
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Hereditary non-polyposis colorectal cancer; a.k.a. lynch syndrome.
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Genes involved in Lynch syndrome (4)
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MSH2 and MLH1, MSH6, PMS2
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Characteristics of Lynch syndrome (3)
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-Early age of colorectal cancer diagnosis: mean age is 45 -Tumors predominantly in proximal colon -Extracolonic cancers are involved: endometrium, ovary, stomach, urinary tract, small bowel, bile ducts, sebacious skin tumors.
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Amsterdam II criteria for diagnosing Lynch syndrome
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3 or more relatives with verified HNPCC-associated cancer in family, over 2 or more generations, with one case being a first degree relative of the other two, and one CRC (colorectal cancer) dx before age 50. FAP is excluded; ovarian, gastric, brain, biliary tract, and pancreatic cancer are excluded.
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Other set of guidelines for diagnosing Lynch syndrome
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Bethesda
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Easier guidelines for us to use in our clinics to diagnose Lynch syndrome
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Colon or endometrial cancer dx before age 50 Colon or endometrial cancer dx after 50 if pt has a first degree relative with colon or endometrial cancer at any age Patient has more than one primary Lynch syndrome associated cancer
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Why is it getting more difficult to diagnose Lynch syndrome?
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Family size is getting smaller so family histories are more difficult Wider use of colonoscopies is preventing more colon cancers MSH6 and PMS2 may have lower cancer risks
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Which two Lynch syndrome genes may have lower cancer risks?
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MSH6 and PMS2 may have lower cancer risks
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Risk of getting cancer with MLH1 and MSH2 gene mutations
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Colon cancer, Male: 56% Colon cancer, Female: 48% Endometrial cancer: 35%
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How much does surveillance drop risk of CRC in Lynch syndrome?
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From 11.9% incidence to 4.5% incidence
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Genetic features of Lynch syndrome
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-Genes belong to DNA mismatch repair family (MMR) -Mutations in MMR genes lead to microsatellite instability (MSI) -MMR proteins are missing in the tumor tissue making immunohistochemical (IHC) staining useful
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Microsatellite instability (MSI)
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Repetitive DNA sequences 1-4 nucleotides (microsatellites) long With MMR failure, there will be variability in repeats 95% of HNPCC tumors have MSI (compared to only 10-15% of sporadic tumors)
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Immunohistochemistry (IHC)
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Identify MMR proteins If absent, gene is not being expressed (either mutation or methylated) Helps direct gene testing by predicting likely involved gene If IHC is absent, then it is MSI positive
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Testing for Lynch syndrome
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1) Screen tumor for microsatellite instability (MSI); immunohistochemical (IHC). 95% of HNPCC tumors have MSI (compared to only 15% of sporadic tumors) and IHC loss of protein can help identify specific MMR genes. 2) Analyze targeted MMR genes OSU does routine IHC screening on all colon and endometrial cancers.
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Accuracy of MSI and IHC testing
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10.7% missed by MSI (mucin and scant tumor cells) 8.8% missed by IHC (variability in staining)
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Universal screening for Lynch syndrome
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Many hospitals do routine IHC on all or a subset of colon cancer specimens. Reported on path report; any positives reported to geneticists. OSU was one of the first hospitals to start doing this.
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Lynch syndrome -- management
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Colon: Colonoscopy beginning age 20-25 every 1-2 years, or age 30 for MSH6/PMS2 carriers. Total abdominal colectomy for colon cancer or multiple adenomas/unresectable polyp. Continued surveillance for rectal cancer. Uterus: Annual TVU (transvaginal ultrasound) and endometrial aspirate starting at age 30-35. Consider TAH/BSO after childbearing.
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Recommendations for 1st degree relatives of someone who is positive for a Lynch syndrome mutation
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Genetic testing; $300-400
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Recommendations for a 1st degree relative who is negative for a Lynch syndrome mutation
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Can begin colonoscopies at 50 instead of 25, and only repeat every 10 years. Saves money and reduces mortality and morbidity due to unnecessary screening. Their risk for Lynch-associated cancer is the same as the general population. Their children have a 0% chance of inheriting Lynch syndrome from him.
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Recommendations for a 1st degree relative who is positive for a Lynch syndrome mutation
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Colonoscopy recommended. Children have a 50% risk of being a carrier.
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Recommendations for testing children of a parent with Lynch syndrome
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Testing for adult-onset cancer predisposition is NOT recommended unless it will alter management (for example, if the youngest onset in the family history was age 20, or if some symptoms affect children, then testing is recommended), due to insurance discrimination: GINA does not protect life insurance, disability insurance, or long term care.
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5 Take Home messages about Lynch syndrome
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-Lynch syndrome is a relatively common cause of hereditary CRC. -Testing is cost-effective if done appropriately. -Early identification of at-risk family members can prevent cancer. -Pre-test and post-test genetic counseling are important. -Family as the patient (?)
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FAP
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Familial adenomatous Polyposis
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Estimated penetrance for adenomas with FAP
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90%
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Extracolonic tumors associated with FAP
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Upper GI, desmoid, osteoma, thyroid, brain, others
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Untreated polyposis leads to _____% risk of cancer
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100%
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Genes associated with FAP
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APC, KRAS, SMAD4, TP53
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MAP
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MUTYH-Associated Polyposis
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Estimated penetrance for MAP by age 60 with variable expression
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Almost 100%
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What percentage of the population are carriers for MAP?
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1-2%
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2 common mutations for MAP?
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Y179C and G382D. These account for 70-80% of the mutations. About 4% of people who have MAP will not have these mutations.
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What percentage of American women will be diagnosed with breast cancer within their lifetime?
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1 in 8
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True or false: Breast cancer on the father's side doesn't contribute to risk
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False: Half of all women with hereditary risk inherited it from their father
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True or false: Ovarian cancer is not a factor in breast cancer risk
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False: Ovarian cancer is an important indicator of hereditary risk, although it is not always present
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True or false: The most important thing in a family history is the number of women with breast cancer
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False: Age of onset of breast cancer is more important than the number of women with the disease
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High risk breast cancer
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Hereditary cancer (HBOC): 50-85% risk
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Medium risk breast cancer
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Familial risk (multiple relatives with breast cancer at varying ages): 15-25% risk
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Low risk breast cancer:
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Sporadic (one or two relatives with breast cancer, usually at later ages): 10-12%
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Breast cancer genes and their contribution to breast cancer
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BRAC1: 20-40% BRAC2: 10-30% TP53: ;1% PTEN: ;1% Other genes: 30-70%
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HBOC
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Hereditary breast cancer and ovarian cancer syndrome
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What would you look for in the family history to be keyed into HBOC?
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Multiple cases of early onset breast cancer Ovarian cancer Breast and ovarian cancer in the same women Bilateral breast cancer Male breast cancer Ashkenazi Jew heritage
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BRCA-1 associated cancers risk by age 70
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Breast cancer: 50-85% risk (early age of onset and triple-negative: missing 3 receptors on cells) Ovarian cancer: 15-45% Male breast cancer: 1-2% Prostate cancer: possible increased risk
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BRCA-2 associated cancers risk by age 70
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Breast cancer: 50-85% risk (early age of onset) Second primary breast cancer: 20-60% (bilateral breast cancer. 2 independent tumors) Ovarian cancer: 10-20% Male breast cancer: 6% Pancreatic, melanoma, laryngeal cancers: possible increased risk
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Breast cancer surveillance for people with HBOC
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BSE: breast self exam every month starting at age 18 CBE: clinical breast exam every 6-12 months at age 25 (or 5-10 years before earliest dx in family) MRI: annually starting at age 25 (or 5-10 years before earliest dx in family) Mammogram and MRI: annually starting at age 30 Consider chemoprevention: tamoxifen Consideration of prophylactic masectomies Recommend prophylactic BSO between age 35-40 (consider reproductive desires) If delaying BSO: pelvic exam and transvaginal ultrasound with color doppler imaging every 6 months beginning at age 30-35 with concurrent serum CA-125 (or 5-10 years before earliest dx in family) Consider oral contraceptive (discuss risk/benefit)
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If your pt has a strong family hx of breast cancer, should you genetically test your pt or affected family members first?
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Test affected family member first, when possible (but there are always exceptions). Identifying a familial mutation allows for targeted testing of family members. Improved result interpretation.
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Triple negative and connection to HBOC
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Estrogen Receptors/Progesterone receptors/Growth factor (Her-2neu) receptors negative 57% of breast tumors in BRCA1 mutation carriers were triple negative. 19.5% incidence of BRCA1/2 mutations in an unselected cohort of patients with triple negatives The 2011 National Comprehensive Cancer Network recommends genetic testing for anyone diagnosed with triple negative breast cancer before age 60
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What is included in informed consent for genetic testing (10 things)
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-Syndrome, genes to be tested, associated risks -Possible results and implications (including VUS—Variants of Uncertain Significance) -Options to assess risk without testing -Implications for family members—importance of sharing information -Accuracy of testing -Cost -Psychological implications -Genetic discrimination risks -Options and limitations of results-based management -Follow up plan
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Until 2013, what was true about genetic testing for BRCA?
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A company called Myriad genetics held the patent
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Multi-gene panels
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Next generation sequencing--difficult to detect deletions. Panels include 6-50 + genes with some combo of: High penetrance genes associated with breast cancer (TP53, PTEN) Low penetrance genes associated with breast cancer (CHEK2, ATM) Cancer genes that are associated with other cancer syndromes (Lynch genes, thyroid genes) Other genes that are less studied and may or may not contribute to risk
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What is the issue with multi-gene panels?
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Complicates informed consent process
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If someone has only a familial risk of cancer but is negative for an inhereted HBOC gene, what are the surveillance recommendations?
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Still increased risk despite negative test results. Recommend increased cancer screening. -Annual mammogram +/- MRI -Consideration of chemoprevention -Consideration of risk reducing masectomies -Consideration of additional genetic testing
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Take-home messages about family hx and cancer (5)
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-Family history is essential: maternal and paternal history equally important. -Obtain information about diagnoses in family including primary site and age of dx -Best if possible to initiate testing with a family member who has actually had cancer -Pre-test counseling is important -Interpret all results in context of family history (even if negative for hereditary, familial is still important--something about environment the family shared may increase cancer risk)
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HBOC in those of Ashkenazi Jew descent
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1 in 40 Ashkenazi Jews (males and females) carry a BRCA1 or BRCA2 mutation 1 in 400 of non-Jewish individuals 3 mutations (2 in BRCA1 or 1 in BRCA2) cause 95% of HBOC (in Ashkenazi Jews?)
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Relevance of a female-limited family structure to HBOC
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Patients with a limited family structure (less than 2 female first or second degree relatives on either the maternal or paternal side who survived past 45) may have up to a 13.7% chance of a BRCA1/2 mutation compared to a 5.2% risk in those with an adequate family structure
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BRCA2 and Fanconi Anemia
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People who are homozygous for a BRCA2 mutation have a condition called Fanconi Anemia. Physical abnormalities: short stature, abnormal skin pigmentation, malformations of thumb/forearms, hearing loss, developmental delay Progressive bone marrow failure (usually presents by age 7-8) Adult onset aplastic anemia Myelodysplastic syndrome or AML Solid tumors: squamous cell carcinoma of head/neck/esophagus/vulva, cervical cancer, liver tumors
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PALB2
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Partner And Localizer of BRCA2 Breast cancer risk may be similar to BRCA2 carriers (50%) Pancreatic cancer risk increased Unclear if ovarian cancer risk is increased Homozygous mutations cause Fanconi Anemia
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PTEN—Cowden Syndrome
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Cancerous manifestations: Breast cancer: 25-50% Thryoid (follicular or papillary) cancer: 10%. Endometrial cancer: 6-10% Renal cell (clear cell) cancer Colon cancer Melanoma Non-cancerous manifestations: Hamartomas (skin lesions, breast, colon polyps): nearly 100% Macrocephaly (head size is greater than 97th percentile): 80% Multinodular goiter, thyroid adenomas: 56-60% Lipomas Hemangiomas (arteriovenous malformations)
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TP53—Li-Fraumeni Syndrome
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Rare hereditary cancer syndrome causing high lifetime risk for cancer. Early onset breast cancer, bone/soft tissue sarcomas, brain tumors, leukemia, adrenocortical tumors, others. Multiple cancers often seen in same individual Caused by mutations in TP53 and perhaps other like CHEK2 50% of affected individuals develop cancer by age 30 and 90% develop cancer by age 70
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CDKN2A and CDK4—Familial melanoma
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CDKNA2 is a tumor suppressor gene: loss of this gene results in loss of p16 activity which eliminates cell cycle regulation. CDK4 is a proto-oncogene: mutations lead to a gain of function that down-regulates pRb, resulting in a lack of cell cycle control Mutations in these genes lead to an increased risk of melanoma, moles, and pancreatic cancer
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RET—Multiple Endocrine Neoplasia
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Due to mutations in the RET proto-oncogene. Clinical features can include medullary thyroid carcinoma (MTC), parathyroid hyperplasia, and pheochromocytoma. 1-7% of patients with apparently sporadic MTC had a germline RET mutation. Prophylactic thryoidectomy is recommended prior to 6 years of age.
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When should genetic testing for cancer be considered? (4)
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-If significant family cancer history -If reasonable likelihood of carrying an altered cancer susceptibility gene (affected family members usually tested first) -If results will influence medical management -If patients wants information (empowerment)
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How should genetic testing be done?
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In context of genetic counseling. Discuss all medical and social concerns and provide psychosocial support. It is easier and less stressful to review the implications of testing *before* obtaining results.
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Possible results of genetic testing (4)
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Positive Negative 1) True Negative (a true negative result does not mean that there is no cancer risk, but rather that the risk is probably the same as the cancer risk in the general population) 2) Negative in affected individual (if strong family history, then this negative does not provide useful information--still something that is causing cancer, maybe environmental, maybe undiscovered gene mutation). VUS: Variant of Uncertain Significance, additional information is needed
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Benefits of genetic testing (4)
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-Identifies high risk individuals -Identifies noncarriers in families with a known mutation -Allows early detection and prevention strategies -May relieve anxiety
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Risks/limitations of genetic testing (4)
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-Does not detect *all* mutations -Continued risk of sporadic cancer (those who test neg may have false sense of assurance) -Efficacy of interventions unproven -May result in psychosocial or economic harm
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Hereditary cancer preventative options
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Increased and earlier screening Consider preventative surgery Consider medications to reduce risk
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Familial cancer preventative options
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Increased screening, tailored to number of diagnoses and ages of dx in family
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Sporadic cancer preventative options
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Follow American Cancer Society Guidelines
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Cancer genetic testing panels
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Variety of panels to choose from, depending on the combinations of cancer diagnoses identified in the family
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Pros of cancer genetic testing panels (2)
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-Ordering a panel may reduce the cost of testing, if you are likely to consider ordering multiple single-gene tests -Clinical and research testing may be available, although it is important to make sure that your specific genes of interest are included in the panel you are ordering.
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Cons of cancer genetic testing panels (2)
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-Some of the genes tested for in these panels are well-known with clear-cut, standard recommendations, whereas the specific cancer risks and management recommendations for other genes are yet to be clearly delineated. -Because these panels include multiple genes, and genes that have not been extensively tested, there is a higher likelihood of detecting one or more VUS
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Things to consider when ordering panel vs single gene testing (3)
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-Will testing affect management for pt and/or family -Will testing be covered by insurance: Most insurers cover breast/colon panels if pt meets HBOC or lynch syndrome criteria. Some insurers will not allow reflex to a panel if BRCA 1/2 testing or Lynch testing has already been done -Timeliness of results (eg. surgical decision cases): BRCA 1/2 gene testing typically takes 2-3 weeks; panel testing can take anywhere from 3-16 weeks
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