BIO 6 Denise lim Cabrillo college – Flashcards

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Coccus
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Spherical
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Diplococci
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paired spheres
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streptococci
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chain-links/strands of spheres
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tetrads
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four spheres in one plane
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sarcinae
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8 spheres in cubic structure
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staphylococci
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Clumps of spheres
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Bacillus
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rod-shaped
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diplobacilli
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pairs of rod shaped cells, end to end
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streptobacilli
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chain-links/strands of rods
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coccbacilli
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cells in between spherical and rod-shaped
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vibrio
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curvy, like a comma
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spirillum
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corkscrew shaped, NOT wormlike
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spirochete
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corkscrew shaped, wormlike
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cell wall (3 functions)
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-rigid
-protective - prevents osmotic lysis
-vulnerable to some antibiotics
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primary structure of gram postive cell wall
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-thick layer peptidoglycan
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peptidoglycan is made up of
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mainly carbohydrates with some proteins
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structure of peptidoglycan
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carbohydrate rods cross linkes with short polypeptide (protein) chains; like woven fabric or chain link fence
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Gram positive cell wall stains what color?
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purple
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how do gram positive and gram negative cell structures get their name?
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staining technique
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structure of gram negative cell wall (2)
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-outer membrane
-thin layer of peptidoglycan
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The outer membrane of a gram negative cell wall has these components (3)
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-lipoprotein
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Gram negative cell wall stains what color?
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pink/orange
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Types of cell walls (not gram positive or gram negative) (3)
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-Acid fast
-archaea
-wall-less
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Name two types of glycocalyx
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-slime
-capsule
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4 functions of gylcocalyx
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-attachment/stickiness
-protection from phagocytosis and desiccation
-emergency nutrient source
-prevents loss of nutrients
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Tail-like protuberance for motility
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flagella
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monotrichous
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one polar flagella
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lophotichous
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two or more flagella at one end
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amphitrichous
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tuft of flagella at each end of the cell
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peritrichous
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flagella all around the cell
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atrichous
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without flagella
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endoflagella
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flagella inside a sheath (like spirochetes' axial filaments)
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2 parts of the flagella (structure)
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-hook
-filament
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Bacterial movement is called
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bacterial taxis
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bacterial taxis happens via
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run and tumble
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aerotaxis
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bacterial movement triggered by oxygen sensing
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chemotaxis
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bacterial movement triggered by chemical sensing
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phototaxis
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bacterial movement triggered by light sensing
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magnetotaxis
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bacterial movement triggered by electromagnetic sensing
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axial filaments create which motion
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corkscrew
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axial filaments are found on what kind of bacteria shape
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spirochetes
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how do axial filaments differ from flagella? (2)
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-axial filaments are under an outer sheath
-they are found on spirochetes
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primary function of pili
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transfer DNA from one bacteria to another (sex pilus)
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2 secondary functions of pili
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-aids motility
-attachment between two cells
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f-plasmid
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-fertility = F
-a non-chromosomal bit of genetic material that allows a bacterial cell to form a sex pilus and transfer genetic material to other bacterial cells
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fimbriae function
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-attachment between cells and host (improves ability to colonize)
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plasma membrane function (4)
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-selective permeability
-site of respiratory enzymes
-site of photosynthetic pigments and enzymes
-some antibiotics act here
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plasma membrance structure (2)
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-phospholipid bilayer
-membrane proteins
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phospholipid bilayer function
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barrier to water soluble molecules
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what can pass through plasma membrane/phospholipid bilayer? (2)
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-fat soluble molecules
-small molecules (water)
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name the functions of proteins in the lipid bilayer (2)
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-transport proteins
-receptors
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3 types of passive transport
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-simple diffusion
-facilitated diffusion
-osmosis
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osmosis
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water moving from low solute to high solute
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simple diffusion
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solute moves from high concentration to low concentration
(in a cell only fat soluble molecules can cross lipid bilayer)
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facilitated diffusion
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solute moves from high concentration to low concentration (but in a cell needs a transport protein to get across lipid bilayer)
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hypotonic
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solution outside cell is lower concentration; fluid moves into the cell
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hypertonic
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solution outside cell is higher concentration; fluid moves out of the cell
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isotonic
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solution inside and outside the cell are at equal concentrations
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plasmolysis
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-caused by hypertonicity
-plasma membrane shrinks away from cell wall
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active transport
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-moving from low concentration to high concentration
-requires a protein pump
-requires energy
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nucleoid
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the area of the cell with genetic material; has no membrane
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bacterial chromosome is part of what organelle
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nucleoid
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Where is the DNA in bacteria stored
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on the chromosome in the nucleoid
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plasmid
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contains non-essential genetic material
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ribosomes function
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synthesizes protein
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ribosome structure
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made up of two subunits
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metachromatic granules
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inclusion storing phosphate
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carboxysomes
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inclusion containing CO2 fixing enzyme
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gas vacuoles
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inclusion providing bouyancy in water
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magnetosomes
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inclusion creating electromagnetism
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endospores
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protective dormant genetic spores that survive hostile environments for the survival of the species.
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endospores are formed by:
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duplicate DNA segregates to one part of the cell, which gets surrounded by a separate plasma membrane and then peptidoglycan creates a protective coating for when cell dies
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anabolic processes
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metabolism requiring energy input
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catabolic processes
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metabolism creating energy output
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examples of anabolic processes
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-synthesis of large molecules within the cell
-active transport
-movement
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examples of catabolic processes
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-degradation of large molecules for fuel
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metabolism requires
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energy (ATP)
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endergonic
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reactions that store energy
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exergonic
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reactions that release energy
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substrate level phosphorylation
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transfer of phosphate from one molecule to another
-endergonic
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oxidative phosphorylation (ETC)
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transfer of electrons from higher to lower energy level
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enzymes are integral to metabolism because
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they lower activation energy for reactions
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prokaryote characteristics (2)
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-no internal membranes/organelles
-single cell organisms
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eukaryote characteristics (2)
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-has internal membranes/organelles
-multi cell organisms
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element (2)
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-pure chemical substance
-# of atoms is # of protons
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atom (2)
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-has nucleus with neutrons and protons
-has electrons in shells
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proton
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positively charged subatomic particle
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electron
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negatively charged subatomic particle
-has kinetic energy
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neutron
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neutrally charged subatomic particle
-change # of neutrons to create isotopes
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which subatomic particle has kinetic energy?
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electron
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ion
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charged particle
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anion
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negatively charged ion
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cation
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postively charged ion
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covalent bonds (2)
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-atoms share electrons
-each pair of electrons creates one bond
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ionic bonds (3)
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-ions are attracted to each other because of opposite charges
-form crystals
-broken down by water because it is polar
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which type of bonds are broken by water
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ionic
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hydrogen bonds
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-happen between polar molecules
-temporary/weak bonds
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pH
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measurement of H+ concentration
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How do acids preserve food?
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high H+ concentration disrupts hydrogen bonding and destroys protein shape
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hydrophobic
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fat soluble
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hydrophilic
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water soluble
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amphipathic
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part of the molecule is hydrophobic, part of the molecule is hydrophilic
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inorganic molecules
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no C-H bonds
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organic molecules
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have C-H bonds
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monomers
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single molecule
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polymers
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multiple molecules joined together
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breakdown of polymers into monomers
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hydrolysis; water splits apart and polymer splits apart, parts reassemble into several simpler molecules
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formation of polymers
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dehydration synthesis; water released
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carbohydrate formula
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n(CH2O)
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carbohydrate function (2)
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-energy storage
-structure
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carbohydrate monomer
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monosaccharide
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carbohydrate polymer
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polysaccharide
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3 simple monosaccharides
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-glucose
-fructose
-galactose
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3 disaccharides
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-sucrose
-maltose
-lactose
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3 polysaccharides
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-starch
-glycogen
-cellulose
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starch
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-found in plants
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glycogen
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found in animal tissues
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peptidoglycan
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structural component of bacterial cell wall
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lipids structure
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long chain hydrocarbons
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lipid function (2)
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-energy storage
-structure (cell membranes)
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lipid monomer
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fatty acid
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lipid polymers (2)
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-triglycerides
-phospholipids
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saturated fat (3)
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-all C-C bonds are single bonds
-fatty acids are straight
-form solids at room temperature bc they stack well
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unsaturated fat (3)
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-C-C chain contains double bonds
-fatty acids are bent from double bonds
-form liquids are room temperature
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triglyceride structure
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three fatty acids linked to glycerol
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phospholipid structure (2)
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-2 fatty acid chains are hydrophobic
-phosphate is hydrophilic
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phospholipid function (3)
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-plasma membrane
-lipid bilayer
-outer membrane of gram negative cell walls
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protein function (4)
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-structure
-enzymes
-functional proteins
-energy
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protein monomers
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amino acid
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protein polymers
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peptides or proteins
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amino acid structure (4)
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-Amine group (NH2)
-carboxylic acid (COOH)
-H atom
-R group
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protein structure (primary)
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polypeptide strand (amino acid sequence)
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protein structure (secondary)
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-folding of peptide chain in a portion of a protein
-involves H-bonding
-helix (coil, has give) OR pleated sheet (tensile strength)
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protein structure (tertiary)
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3D folding of full protein
-includes intramolecular bonds -disulfide bonds; ionic bonds; hydrophophic interactions
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protein structure (quarternary)
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two or more complete proteins bonding to each other
-includes intermolecular bonds like H bonds
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Nucleic acid monomer
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nucleotide
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Nucleic acids function (2)
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-information (DNA, RNA)
-energy (ATP)
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Nucleic acid polymer
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DNA, RNA
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Nucleic acid structure (3)
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-sugar
-phosphate
-nitrogenous base
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DNA nitrogenous bases
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A, T, C, G
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RNA nitrogenous bases
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A, U, C, G
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sugar-phosphate backbone
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the structure of DNA/RNA, with nitrogenous bases attached that give genetic information
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DNA structure (3)
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-sugar-phosphate backbone
-nitrogenous bases (A, T, C, G)
-double stranded helix
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RNA structure (3)
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-sugar-phosphate backbone
-nitrogenous bases (A, U, C, G)
-single genes
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RNA function
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-copy proteins
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ATP
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adenosine triphosphate
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