Biology 1002 – Flashcards

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Taxonomy
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Branch of Biology that is concerned with naming classifying organisms
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Carolus Linnaeus
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Modern taxonomy. Introduced the two part scientific name (Scientific bi nomenclature)
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Two Part scientific name
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Genus species
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Genus
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a group that includes a number of very closely related species
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Species
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a genus that includes populations of organisms that can potentially interbreed naturally
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Linnaean Classification System
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Eight taxonomic categories
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Name the Linnaean Classifications
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Domain Kingdom Phylum Class Order Family Genus Species
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Modern Classification
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emphasizes patterns of evolutionary descent as biologists realized that taxonomic categories should reflect evolutionary relatedness
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The more ____ two organisms share the closer their __ relationship
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The more categories two organisms share the closer their evolutionary relationship
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When humans evolved from apes T/F
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We have a common ancestor, T
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Phylogeny
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Modern classification. Reconstructs evolutionary history.
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Systematics
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Science of reconstructing phylogeny or evolutionary history.
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What do systematists identify to show evolutionary relationships?
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Features; genetic, characteristics, appearance What defines life? *Function is the same.
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What plays a key role in systematists?
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Anatomy
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How does anatomy play a key role in systematists?
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They look at external and internal structures help identify evolutionary history
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Homologous Structures
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Same structures and functions, common ancestor, split into different species
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Molecular Similarities
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Systematists examine genetic similarities between DNA nucleotide sequences
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How common is chimp DNA nucleotide sequence to humans?
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96%
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Similarities in ____ can also be used to establish relationships between organisms
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chromosome structure
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Before 1970, how were species divided?
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Anamalia and Plantae (including plants, bacteria, fungi, and photosynthetic eukaryotes)
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Why was the two-domain approach an oversimplification?
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It didn't accurately reflect life's history
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Describe the solution of the two domain system and who came to discover it
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The solution: Three domain system. Carl Woese discovered that prokaryotic organisms included two very distinct groups (Bacteria and Archaea)
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Prokaryotic Characteristics
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No nucleus or nuclear envelope Genetic material in a nucleoid region No organelles or internal membrane
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Eukaryotic Characteristics`
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Nucleus with an envelope Genetic material in the nucleus Contains cytoplasm with membrane bound organelles
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Current three domain system
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Bacteria (p) Archaea (p) Eukarya (e) Animals Protists Fungi Plants
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When did the three domains split?
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They split very early in life, long before animals and plants evolved
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How many kingdoms are in the domain Eukarya?
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Four: Animalia, Plantae, Fungi, and Protists
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When/How do classifications change?
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They change when new info is discovered. They are frequent changes at the species level. Rarely are there changes in the domain and kingdom level. Ex: African (Savannah and Forest) and Indian Elephant
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Biodiversity
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Total number of species in an ecosystem Currently: 1.5 million most are animals. there is believed to be a high multitude of prokaryotes and protists that aren't discovered yet
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How many species exist?
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7-10 million 7,000-10,000 are identified/yr
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Where is the home to two thirds of the world's existing species, most of which have yet to be named?
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Tropical Rainforests
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What was the purpose of the recently completed Human Genome Project?
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to determine the nucleotide sequence in human DNA
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In the five-kingdom system, prokaryotes are placed in the kingdom _____.
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Monera
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In the two-kingdom system, why were fungi classified in the kingdom Plantae?
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They are sedentary
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When did the "tree of life" split into three parts, Bacteria, Archaea, and Eukarya
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before the appearance of plants, animals, and fungi
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From a classification viewpoint, how are plants associated with animals?
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They both belong in the Domain Eukarya.
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Why is it particularly difficult for the systematist to classify asexually reproducing organisms as a species?
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Asexually reproducing organisms do not interbreed.
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HIV-1 has not always been found in humans, where could it have originated?
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in non-human primates
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How can an understanding of the evolutionary origin of HIV help researchers devise better ways to treat and control the spread of AIDS?
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It may be possible to use an animal model, such as the chimpanzee, to study treatment and spread of the disease.
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What were Earth's first organisms?
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Prokaryotes, single celled microbes that lacked organelles
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What forms 2/3 of life's domains?
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Bacteria and Archaea (P)
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What are Bacteria and Archaea's similarities?
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They are both prokaryotic, single celled organisms.
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What are the structural differences between Bacteria and Archaea?
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They have different cell walls, plasma membrane composition, ribosomes, and RNA polymerases. There is also differences in transcription and translation processes.
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What is a polysaccharide that strengthens the cell wall of bacteria and is not found in Archaea?
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Peptidoglyan
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Prokaryotic Classification
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Shape, Means of Locomotion, Pigments, Nutrient requirements, colony appearance, gram staining characteristics, and nucleotide sequences.
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Prokaryotic Shape and Structure
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They differ. Some are extremely small. They have three different shapes: spherical, rod like, and corkscrew.
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Prokaryotic Locomotion
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Flagella: singly in pairs or scattered over the cell surface.
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Bacteria Flagella
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Wheel and Axle: within cell wall and plasma membrane, rapid rotation.
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Archael flagella
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Thinner and constructed from proteins
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Bacteria forms ___ on surfaces
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Film, of carb/ protein slime
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Biofilms
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Slime secreting bacteria, ex dental plague.
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Bacteria embedded in biofilms...
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Protected from disenfectants and antibiotics. ex- plague physically removed.
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Bacterial Endospores
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Protective endospores allow some bacteria to withstand adverse conditions. they are thickly wrapped particles of genetic material and few enzymes.
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What can endospores endure?
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Boiling for an hour, being sealed within a rock for 250 million years. Practically, harsh conditions
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What are prokaryotes' environment?
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High pressure, cold, high salt, acidic, alkaline, moderate, and hot
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Describe prokaryotic metabolism
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Anaerobic/aerobic
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Give an example of aerobic/anaerobic
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Both: E Coli Anaerobic: Tetanus
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How do prokaryotes extract energy?
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organic compounds like carbs, fats, and proteins poisonous compounds to humans like methane, petroleum, benzene inorganic molecules, like hydrogen, sulfur, ammonia, and iron sunlight- cyanobacteria
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How do they reproduce (Pro)?
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binary fission, occuring as fast as 20 minutes, and causes rapid spreading mutations and rapid evolution
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What is conjugation?
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It is the exchange of genetic materials without reproduction, utilizing sex pili. It can ever occur with different species
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How does conjugation occur?
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Circular DNA molecules called plasmids carry genes to the donor, through the sex pili (connect a cytoplasmic bridge)
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How are the plasmids resistant to antibiotics?
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They contains alleles conferring mutations or evolutionary resistance
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Can conjugations produce new genetic combinations?
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Yes
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How are prokaryotes beneficial?
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They play important roles in animal nutrition, human nutrition, recyclers, and clean up pollution.
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How do prokaryotes play a role in animal/human nutrition?
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Herbivores depend on them to break down cellulose in the cell walls of plants, many foods are produced by bacterial action, and they produce vitamins (vitamin K and b12)
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How do prokaryotes recycle?
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CATABOLISM. They obtain energy from breaking waste products and the dead bodies of plants and animals into simpler molecules, which provides the basis for continued life on Earth.
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How do prokaryotes clean up pollution?
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Nearly all human made susbstances are biodegradable by some sort of bacterial species, specifically oil in the case of the Exxon Valdez clean up.
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How are prokaryotes harmful for health?
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Disease producing (pathogenic), anaerobic bacteria (poisons), common bacterial species can be harmful
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Do pathogenic archaea exist?
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No, they have yet to be discovered.
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Name harmful anaerobic bacteria
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Clostridium tentani: tetanis
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How does clostridium tentani work?
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It enters through the body through a puncture wound and if its lodged deeply enough, it produces a paralyzing poison (lockjaw)
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What can pathogenic bacteria cause?
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Bubonic plague, Staph, Meningitis, food poisoning, STDs, tuberculosis, and others
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Describe Bubonic plague
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It is spread by rat fleas, and killed 100 million people in the 1300s, a third of the population
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Tuberculosis
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caused by Pathogenic bacteria.
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Ghonorrhea and syphilis
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STDs caused by pathogenic bacteria
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Cholera
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Caused by pathogenic bacteria. It is water transmitted.
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Name harmful common bacterial species
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Strep and E Coli
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Describe Strep
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Caused by bacteria, and includes tooth decay, pneumonia, and flesh eating infection
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Describe E Coli
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Caused by bacteria. It commonly inhabits the digestive system. Some are pathogenic. It is transmitted through infected cattle/ undercooked.
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Define a virus
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It consists of a molecule of DNA or RNA surrounded by a protein cote. They have no cells. They need a host to reproduce. Small. Variety of shapes.
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Is a virus, viroid, or prion considered to be living?
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NO
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Name different virus (diff shapes)
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Rabies virus, bacteriophage, tobacco mosaic virus, and influenza
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Whats the function of the virus protein coat?
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It enables entry into a host cell
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How does our immune system respond to viruses?
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Destroys it immediately. When you get sick, its the virus your immune system wasn't able to destroy.
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T/F: Each viral type is specialized to attack specific host cells, and is only capable of invading the host cells it is specific for
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True. For example, bacteria are infected by bacteriophage viruses. A good virus attacks a bacteria. HIV binds with cell receptors.
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Describe bacteriophages
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They are a type of virus, specified to attack bacteria. It can be used to treat bacterial diseases. (Hand santitizer). However, it makes it less effective.
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Describe the specified virus types that attack human cells
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Cold (Respiratory), rabies (Nerve), herpes ( Genitals, mouth)
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HIV (Human Deficiency Syndrome)
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It is virus, which attacks a specific white blood cell type. It causes AIDS
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Cervical Cancer
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10% of women. HPV remains in the cells of the cervix and increases the chance of cancer.
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HPV
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90-98% causes cervical cancers. Factors also increase the risk of cervical cancer: age, smoking, and lowered immunity. Vaccine: gardasil, not a cure.
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Hep B and C
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Cause liver infections, viral infections. It is spread through unprotected sexual contact or exchange of blood.
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Why do viruses have high mutation rates?
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They lack the mechanisms to correct errors. They cause resistance to an antiviral drug, and these render drugs ineffective.
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Define a viroid
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They are some infectious agents that are even simpler than viruses. They are simple infectious particles with short RNA strands. They enter a host cell nucleus and direct new viroid synthesis.
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Define a prion
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It is a misfolded, infected protein.
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Kuru
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Prion. Degenerative disease in New Guinea. Transmitted by ritual cannibalism of the dead, affected the nervous system
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Other degenerative diseases (Prions)
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Kuru, CJD, Scrapie, Mad Cow/ BSE, etc.
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Stanley Prusiner
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1982, demonstrated that diseases were caused by an infectious protein particle devoid of any nucleic acids. They are heritable and transmitted.
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How are prions inherited?
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Point mutations, may be linked to Alzheimers and Parkinsons
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How are prions destroyed?
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Clorox Bleach. Normal proteins would unfold and denature. Nothing else works, they are trying to find stem cell research for replacing the dead neurons.
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How much does bacteria replicate in one hour?
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Binary Fission, 20 mins/ 6x
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What are protists?
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any eukaryote that is not a plant, animal, or fungus. Most protists are microscopic in size Some are large aggregations or colonies of single-celled individuals; others are multicellular organisms
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How do protists obtain nutrition?
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Ingestion, Absorption, and Photosynthesis
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Protists (Ingestion)
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Predators, using the extensions of the cell membrane called psuedopods to surround and engulf prey.
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Protists (Absorb)
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They absorb directly from the environment. They have two types, either free living types in the soil that decompose organic matter or parasites that live inside the bodies of a host organism.
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Photosynthetic protists
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Oceans, lakes, ponds. ALGAE
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What is algae?
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ALL photosynthethic protists
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What are protozoa?
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Non photosynthethic protists
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How do protists reproduce?
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Asexually: Mitotic cell division Sexually: genetically diverse
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How do protists affect humans/ organisms?
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The ecological role of algae is positive; they capture solar energy and make it available to other organisms in the ecosystem, and also release oxygen gas into the water, allowing fish to breathe
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What are protists' negative impact?
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They cause deadly diseases, destroy crops, and release toxins that can accumulate to harmful levels in coastal areas
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What are the major groups of protozoans?
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Excavates, Euglenozoans, Stramenopiles, Alveolates, Rhizarians, Amoebozoans. Red and Green Algae..
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Define Excavates
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They are protozoan group. They have a feeding groove and lack mitochondria.
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Giardia
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Excavate: gastrointestinal diseases
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Euglenozoans
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Distinctive mitchondria. Live mostly in freshwater and swim with a flagella.
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Euglena
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Euglenozoan. Contains a photoreceptor that detects the direction of light and allows the organism to move towards light to perform photosynthesis.
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Stramenopiles
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Includes photo and non photosynthetic organisms. All have thin, hair like flagella. Can be unicellular or multicellular. Includes mold, diatoms, and brown algae
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Alveolates
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Parasites, predators, and phytoplankton. Single celled. Can caused red tide/malaria.
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Rhizarians
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foraminiferans and radiolarians. Pseudopods are think and threadlike +shells. Foraminiferans: chalky shells. Radiolarians: shells, silica.
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Amoebozoans
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Inhabit aquatic and terrestrial environments, feed and move by pseudopods. Predatory/ Parasitic. Some causes dysentery.
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Red Algae
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Clear tropical oceans. Multicellular, photosynthetic seaweeds. Pigments range from red to black, where they absorb the deeply penetrating blue green light and transfer this light energy to chlorophyll.
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Green Algae
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Ponds and lakes, photosynthetic, multicellular and unicellular.
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Whats the process of alternations of generations?
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A diploid generation alternates with a haploid generations
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Sporophyte
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A diploid sporophyte plant produces haploid spores through meiosis
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Gemetophyte
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After the sporophyte plant produces haploid spores by meiosis, mitosis occurs. The spores divide into haploid gametophyte plants.
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End result of alternation of generation
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Haploid gametophyes produces haploid male and female gametes through mitosis. the gametes fuse and form diploid zygotes
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How do plants play a crucial ecological role?
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Plants capture energy that other organisms use, through photosynthesis, plans build soil, prevent erosion and flooding, plants help keep ecosystems moist and help maintain the atmosphere by the release of oxygen.
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Where do plants originate from?
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green algae, called stonewarts. They have similar DNA and use the same type of chlorophyll and accessory pigments in photosynthesis. BOth use starch and have cellulose in cell walls.
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Did land help plants?
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It gave them direct access to sunlight, access to nutrient rich soil
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