Metronidazole C6H9N3O3 structure – Flashcards

Flashcard maker : Emily Kemp

Molecular Formula C6H9N3O3
Average mass 171.154 Da
Density 1.5±0.1 g/cm3
Boiling Point 405.4±25.0 °C at 760 mmHg
Flash Point 199.0±23.2 °C
Molar Refractivity 41.0±0.5 cm3
Polarizability 16.2±0.5 10-24cm3
Surface Tension 60.5±7.0 dyne/cm
Molar Volume 117.9±7.0 cm3
  • Experimental data
  • Predicted – ACD/Labs
  • Predicted – EPISuite
  • Predicted – ChemAxon
  • Predicted – Mcule
  • Experimental Physico-chemical Properties
    • Experimental Melting Point:

      161 °C TCI M0924
      158-162 °C Oxford University Chemical Safety Data (No longer updated) More details
      159-163 °C LKT Labs
      [M1977]
      159 °C Jean-Claude Bradley Open Melting Point Dataset 17317
      160 °C Jean-Claude Bradley Open Melting Point Dataset 15095, 16645, 28269
      159-161 °C Alfa Aesar H60258
      159-161 °C SynQuest 4H54-1-9A
      160 °C Biosynth Q-201403
      159-161 °C LabNetwork LN00196219
    • Experimental LogP:

      -0.013 Vitas-M STK177359, STK177359
    • Experimental Flash Point:

      199 °C Biosynth Q-201403
    • Experimental Gravity:

      199 g/mL Biosynth Q-201403
    • Experimental Solubility:

      10 mM in H2O MedChem Express HY-B0318
      DMSO 35 mg/mL; Water <1 mg/mL MedChem Express HY-B0318
      Soluble in water, dilute acids and ethanol. Slightly soluble in DMF. DMSO 34 mg/mL. LKT Labs
      [M1977]
  • Predicted Physico-chemical Properties
    • Predicted Melting Point:

      161 °C TCI
      161 °C TCI M0924
  • Miscellaneous
    • Appearance:

      white to slightly yellow crystalline powder Oxford University Chemical Safety Data (No longer updated) More details
    • Stability:

      Stable. Incompatible with strong oxidizing agents. Oxford University Chemical Safety Data (No longer updated) More details
    • Toxicity:

      ORL-RAT LD50 3000 mg kg-1, ORL-MUS LD50 3800 mg kg-1, SCU-MUS LD50 3640 mg kg-1 Oxford University Chemical Safety Data (No longer updated) More details
    • Safety:

      36/37-60 Alfa Aesar H60258
      40 Alfa Aesar H60258
      Carcinogenic/Mutagenic SynQuest 4H54-1-9A
      H351 Alfa Aesar H60258
      P261; P262 Biosynth Q-201403
      P281-P201-P202-P308+P313-P405-P501a Alfa Aesar H60258
      Safety glasses, adequate ventilation. Oxford University Chemical Safety Data (No longer updated) More details
      Warning Alfa Aesar H60258
    • Target Organs:

      Hydrogenase inhibitor; Antibiotic TargetMol T1079
    • Drug Status:

      approved BIONET-Key Organics KS-5140
    • Compound Source:

      synthetic Microsource
      [01500412]
    • Bio Activity:

      . Zerenex Molecular
      [ZBioX-0563]
      Antibacterial MedChem Express HY-B0318
      Antibacterial Antiparasitic MedChem Express HY-B0318
      Anti-infection MedChem Express HY-B0318
      Anti-infection; MedChem Express HY-B0318
      Fe hydrogenase 1;NADPH nitroreductase;14-?? Demethylase TargetMol T1079
      Metabolism; Microbiology & Virology TargetMol T1079
      Metronidazole is a nitroimidazole antibiotic medication used particularly for anaerobic bacteria and protozoa. MedChem Express
      Metronidazole is a nitroimidazole antibiotic medication used particularly for anaerobic bacteria and protozoa.; Target: Antibacterial; Antiparasitic; Metronidazole is a nitroimidazole antibiotic medication used particularly for anaerobic bacteria and protozoa. MedChem Express HY-B0318
      Metronidazole is a nitroimidazole antibiotic medication used particularly for anaerobic bacteria and protozoa.;Target: Antibacterial; AntiparasiticMetronidazole is a nitroimidazole antibiotic medication used particularly for anaerobic bacteria and protozoa. Metronidazole is an antibiotic, amebicide, and antiprotozoal.[1] It is the drug of choice for first episodes of mild-to-moderate Clostridium difficile infection [2]. Metronidazole, taken up by diffusion, is selectively absorbed by anaerobic bacteria and sensitive protozoa. Once taken up by anaerobes, it is non-enzymatically reduced by reacting with reduced ferredoxin, which is generated by pyruvate oxido-reductase. Many of the reduced nitroso intermediates will form sulfinamides and thioether linkages with cysteine-bearing enzymes, thereby deactivating these critical enzymes. As many as 150 separate enzymes are affected.In addition or alternatively, the metronidazole metabolites are taken up into bacterial DNA, and form unstable MedChem Express HY-B0318
  • Gas Chromatography
    • Retention Index (Kovats):

      1518 (estimated with error: 89) NIST Spectra mainlib_352184, replib_76026, replib_236890, replib_335158
      1618 (Program type: Isothermal; Col… (show more) umn class: Standard non-polar; Column length: 2 m; Column type: Packed; Start T: 180 C; CAS no: 443481; Active phase: SE-30; Carrier gas: N2; Substrate: 1% se-30 on Anachrom ABS(80-100mesh); Data type: Kovats RI; Authors: Musumarra, G.; Scarlata, G.; Romano, G.; Cappello, G.; Clementi, S.; Giulietti, G., Qualitative organic analysis. Part 2. Identification of drugs by principal components analysis of standardized TLC data in four eluent systems and of retention indices on SE 30, J. Anal. Toxicol., 11, 1987, 154-163.) NIST Spectra nist ri
    • Retention Index (Normal Alkane):

      1643.7 (Program type: Ramp; Column cl… (show more) ass: Standard non-polar; Column diameter: 0.32 mm; Column length: 12 m; Column type: Capillary; Heat rate: 10 K/min; Start T: 40 C; End T: 290 C; Start time: 1 min; CAS no: 443481; Active phase: SE-30; Carrier gas: He; Phase thickness: 0.25 um; Data type: Normal alkane RI; Authors: Neill, G.P.; Davies, N.W.; McLean, S., Automated screening procedure using gas chromatography-mass spectrometry for identification of drugs after their extraction from biological samples, J. Chromatogr., 565, 1991, 207-224.) NIST Spectra nist ri
      1592 (Program type: Ramp; Column cl… (show more) ass: Standard non-polar; Column type: Other; CAS no: 443481; Active phase: Methyl Silicone; Data type: Normal alkane RI; Authors: Ardrey, R.E.; Moffat, A.C., Gas-liquid chromatographic retention indices of 1318 substances of toxicological interest on SE-30 or OV-1 stationary phase, J. Chromatogr., 220, 1981, 195-252.) NIST Spectra nist ri
    • Retention Index (Linear):

      1590 (Program type: Ramp; Column cl… (show more) ass: Standard non-polar; Column length: 1.8 m; Column type: Packed; Heat rate: 8 K/min; Start T: 130 C; End T: 290 C; End time: 8 min; Start time: 2 min; CAS no: 443481; Active phase: SE-30; Carrier gas: N2; Substrate: Chromosorb W; Data type: Linear RI; Authors: Perrigo, B.J.; Peel, H.W., The use of retention indices and temperature-programmed gas chromatography in analytical toxicology, J. Chromatogr. Sci., 19, 1981, 219-226.) NIST Spectra nist ri
      1669.6 (Program type: Complex; Column… (show more) class: Semi-standard non-polar; Column diameter: 0.25 mm; Column length: 30 m; Column type: Capillary; Description: Multi-step temperature program; T(initial)=60C; T(final)=270C; CAS no: 443481; Active phase: VF-5MS; Carrier gas: He; Phase thickness: 0.25 um; Data type: Linear RI; Authors: Tret’yakov, K.V., Retention Data. NIST Mass Spectrometry Data Center., 2008.) NIST Spectra nist ri

Predicted data is generated using the ACD/Labs Percepta Platform – PhysChem Module

Density: 1.5±0.1 g/cm3
Boiling Point: 405.4±25.0 °C at 760 mmHg
Vapour Pressure: 0.0±1.0 mmHg at 25°C
Enthalpy of Vaporization: 69.3±3.0 kJ/mol
Flash Point: 199.0±23.2 °C
Index of Refraction: 1.612
Molar Refractivity: 41.0±0.5 cm3
#H bond acceptors: 6
#H bond donors: 1
#Freely Rotating Bonds: 3
#Rule of 5 Violations: 0
ACD/LogP: -0.01
ACD/LogD (pH 5.5): 0.05
ACD/BCF (pH 5.5): 1.00
ACD/KOC (pH 5.5): 25.34
ACD/LogD (pH 7.4): 0.05
ACD/BCF (pH 7.4): 1.00
ACD/KOC (pH 7.4): 25.38
Polar Surface Area: 84 Å2
Polarizability: 16.2±0.5 10-24cm3
Surface Tension: 60.5±7.0 dyne/cm
Molar Volume: 117.9±7.0 cm3

Predicted data is generated using the US Environmental Protection Agency’s EPISuite™

 
 Log Octanol-Water Partition Coef (SRC):
 Log Kow (KOWWIN v1.67 estimate) = -0.00
 Log Kow (Exper. database match) = -0.02
 Exper. Ref: Hansch,C et al. (1995)

 Boiling Pt, Melting Pt, Vapor Pressure Estimations (MPBPWIN v1.42):
 Boiling Pt (deg C): 357.30 (Adapted Stein & Brown method)
 Melting Pt (deg C): 127.46 (Mean or Weighted MP)
 VP(mm Hg,25 deg C): 1.31E-007 (Modified Grain method)
 MP (exp database): 160.5 deg C
 Subcooled liquid VP: 3.22E-006 mm Hg (25 deg C, Mod-Grain method)

 Water Solubility Estimate from Log Kow (WSKOW v1.41):
 Water Solubility at 25 deg C (mg/L): 2.573e+004
 log Kow used: -0.02 (expkow database)
 no-melting pt equation used
 Water Sol (Exper. database match) = 9500 mg/L (25 deg C)
 Exper. Ref: YALKOWSKY,SH & DANNENFELSER,RM (1992)

 Water Sol Estimate from Fragments:
 Wat Sol (v1.01 est) = 3.2779e+005 mg/L
 Wat Sol (Exper. database match) = 9500.00
 Exper. Ref: YALKOWSKY,SH & DANNENFELSER,RM (1992)

 ECOSAR Class Program (ECOSAR v0.99h):
 Class(es) found:
 Imidazoles

 Henrys Law Constant (25 deg C) [HENRYWIN v3.10]:
 Bond Method : 1.69E-011 atm-m3/mole
 Group Method: Incomplete
 Henrys LC [VP/WSol estimate using EPI values]: 1.147E-012 atm-m3/mole

 Log Octanol-Air Partition Coefficient (25 deg C) [KOAWIN v1.10]:
 Log Kow used: -0.02 (exp database)
 Log Kaw used: -9.161 (HenryWin est)
 Log Koa (KOAWIN v1.10 estimate): 9.141
 Log Koa (experimental database): None

 Probability of Rapid Biodegradation (BIOWIN v4.10):
 Biowin1 (Linear Model) : 0.5744
 Biowin2 (Non-Linear Model) : 0.4414
 Expert Survey Biodegradation Results:
 Biowin3 (Ultimate Survey Model): 2.7365 (weeks-months)
 Biowin4 (Primary Survey Model) : 3.5533 (days-weeks )
 MITI Biodegradation Probability:
 Biowin5 (MITI Linear Model) : 0.3250
 Biowin6 (MITI Non-Linear Model): 0.0739
 Anaerobic Biodegradation Probability:
 Biowin7 (Anaerobic Linear Model): 0.3396
 Ready Biodegradability Prediction: NO

Hydrocarbon Biodegradation (BioHCwin v1.01):
 Structure incompatible with current estimation method!

 Sorption to aerosols (25 Dec C)[AEROWIN v1.00]:
 Vapor pressure (liquid/subcooled): 0.000429 Pa (3.22E-006 mm Hg)
 Log Koa (Koawin est ): 9.141
 Kp (particle/gas partition coef. (m3/ug)):
 Mackay model : 0.00699 
 Octanol/air (Koa) model: 0.00034 
 Fraction sorbed to airborne particulates (phi):
 Junge-Pankow model : 0.202 
 Mackay model : 0.359 
 Octanol/air (Koa) model: 0.0265 

 Atmospheric Oxidation (25 deg C) [AopWin v1.92]:
 Hydroxyl Radicals Reaction:
 OVERALL OH Rate Constant = 9.3017 E-12 cm3/molecule-sec
 Half-Life = 1.150 Days (12-hr day; 1.5E6 OH/cm3)
 Half-Life = 13.799 Hrs
 Ozone Reaction:
 No Ozone Reaction Estimation
 Fraction sorbed to airborne particulates (phi): 0.28 (Junge,Mackay)
 Note: the sorbed fraction may be resistant to atmospheric oxidation

 Soil Adsorption Coefficient (PCKOCWIN v1.66):
 Koc : 10
 Log Koc: 1.000 

 Aqueous Base/Acid-Catalyzed Hydrolysis (25 deg C) [HYDROWIN v1.67]:
 Rate constants can NOT be estimated for this structure!

 Bioaccumulation Estimates from Log Kow (BCFWIN v2.17):
 Log BCF from regression-based method = 0.500 (BCF = 3.162)
 log Kow used: -0.02 (expkow database)

 Volatilization from Water:
 Henry LC: 1.69E-011 atm-m3/mole (estimated by Bond SAR Method)
 Half-Life from Model River: 4.532E+007 hours (1.888E+006 days)
 Half-Life from Model Lake : 4.944E+008 hours (2.06E+007 days)

 Removal In Wastewater Treatment:
 Total removal: 1.85 percent
 Total biodegradation: 0.09 percent
 Total sludge adsorption: 1.76 percent
 Total to Air: 0.00 percent
 (using 10000 hr Bio P,A,S)

 Level III Fugacity Model:
 Mass Amount Half-Life Emissions
 (percent) (hr) (kg/hr)
 Air 0.000391 27.6 1000 
 Water 45.8 900 1000 
 Soil 54.1 1.8e+003 1000 
 Sediment 0.0887 8.1e+003 0 
 Persistence Time: 981 hr




 

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