Dapivirine C20H19N5 structure – Flashcards

Flashcard maker : Tommy Mason

C20H19N5 structure
Molecular Formula C20H19N5
Average mass 329.398 Da
Density 1.2±0.1 g/cm3
Boiling Point 557.9±60.0 °C at 760 mmHg
Flash Point 291.2±32.9 °C
Molar Refractivity 97.5±0.4 cm3
Polarizability 38.7±0.5 10-24cm3
Surface Tension 64.8±5.0 dyne/cm
Molar Volume 267.7±5.0 cm3
  • Experimental data
  • Predicted – ACD/Labs
  • Predicted – EPISuite
  • Predicted – ChemAxon
  • Experimental Physico-chemical Properties
    • Experimental Melting Point:

      219-222 °C LabNetwork LN01277583
    • Experimental Solubility:

      DMSO 24 mg/ml; Water <1 mg/ml MedChem Express HY-14266
      Soluble in DMSO Axon Medchem 1534
  • Miscellaneous
    • Safety:

      5 Axon Medchem 1534
      H303;H313;H317;H333;H334;H335;H373 Axon Medchem 1534
      no pictogram Axon Medchem 1534
      P101;P102;P103;P260;P262;P263;P264;P270;P280;P304;P312;P340 Axon Medchem 1534
      Warning Axon Medchem 1534
    • Target Organs:

      Reverse Transcriptase inhibitor TargetMol T1815
    • Bio Activity:

      Anti-infection; MedChem Express HY-14266
      Dapivirine(TMC 120, TMC 120 R147681) is a NNRTI for HIV reverse transcriptase with IC50 of 24 nM, inhibits a broad panel of HIV-1 isolates from different classes, inclucing a wide range of NNRTI-resis
      tant isolates. MedChem Express
      DNA Damage/DNA Repair;Microbiology & Virology TargetMol T1815
      HIV NNRTIs MedChem Express HY-14266
      Reverse Transcriptase TargetMol T1815

Predicted data is generated using the ACD/Labs Percepta Platform – PhysChem Module

Density: 1.2±0.1 g/cm3
Boiling Point: 557.9±60.0 °C at 760 mmHg
Vapour Pressure: 0.0±1.5 mmHg at 25°C
Enthalpy of Vaporization: 84.0±3.0 kJ/mol
Flash Point: 291.2±32.9 °C
Index of Refraction: 1.649
Molar Refractivity: 97.5±0.4 cm3
#H bond acceptors: 5
#H bond donors: 2
#Freely Rotating Bonds: 5
#Rule of 5 Violations: 0
ACD/LogP: 3.98
ACD/LogD (pH 5.5): 3.61
ACD/BCF (pH 5.5): 272.08
ACD/KOC (pH 5.5): 1538.24
ACD/LogD (pH 7.4): 3.95
ACD/BCF (pH 7.4): 589.69
ACD/KOC (pH 7.4): 3333.92
Polar Surface Area: 74 Å2
Polarizability: 38.7±0.5 10-24cm3
Surface Tension: 64.8±5.0 dyne/cm
Molar Volume: 267.7±5.0 cm3

Predicted data is generated using the US Environmental Protection Agency’s EPISuite™

 
 Log Octanol-Water Partition Coef (SRC):
 Log Kow (KOWWIN v1.67 estimate) = 4.63

 Boiling Pt, Melting Pt, Vapor Pressure Estimations (MPBPWIN v1.42):
 Boiling Pt (deg C): 490.65 (Adapted Stein & Brown method)
 Melting Pt (deg C): 208.23 (Mean or Weighted MP)
 VP(mm Hg,25 deg C): 5.39E-010 (Modified Grain method)
 Subcooled liquid VP: 4.73E-008 mm Hg (25 deg C, Mod-Grain method)

 Water Solubility Estimate from Log Kow (WSKOW v1.41):
 Water Solubility at 25 deg C (mg/L): 0.4947
 log Kow used: 4.63 (estimated)
 no-melting pt equation used

 Water Sol Estimate from Fragments:
 Wat Sol (v1.01 est) = 0.21389 mg/L

 ECOSAR Class Program (ECOSAR v0.99h):
 Class(es) found:
 Neutral Organics

 Henrys Law Constant (25 deg C) [HENRYWIN v3.10]:
 Bond Method : 5.11E-012 atm-m3/mole
 Group Method: Incomplete
 Henrys LC [VP/WSol estimate using EPI values]: 4.722E-010 atm-m3/mole

 Log Octanol-Air Partition Coefficient (25 deg C) [KOAWIN v1.10]:
 Log Kow used: 4.63 (KowWin est)
 Log Kaw used: -9.680 (HenryWin est)
 Log Koa (KOAWIN v1.10 estimate): 14.310
 Log Koa (experimental database): None

 Probability of Rapid Biodegradation (BIOWIN v4.10):
 Biowin1 (Linear Model) : 0.5942
 Biowin2 (Non-Linear Model) : 0.7094
 Expert Survey Biodegradation Results:
 Biowin3 (Ultimate Survey Model): 1.8944 (months )
 Biowin4 (Primary Survey Model) : 2.8849 (weeks )
 MITI Biodegradation Probability:
 Biowin5 (MITI Linear Model) : -0.3214
 Biowin6 (MITI Non-Linear Model): 0.0007
 Anaerobic Biodegradation Probability:
 Biowin7 (Anaerobic Linear Model): -1.5983
 Ready Biodegradability Prediction: NO

Hydrocarbon Biodegradation (BioHCwin v1.01):
 Structure incompatible with current estimation method!

 Sorption to aerosols (25 Dec C)[AEROWIN v1.00]:
 Vapor pressure (liquid/subcooled): 6.31E-006 Pa (4.73E-008 mm Hg)
 Log Koa (Koawin est ): 14.310
 Kp (particle/gas partition coef. (m3/ug)):
 Mackay model : 0.476 
 Octanol/air (Koa) model: 50.1 
 Fraction sorbed to airborne particulates (phi):
 Junge-Pankow model : 0.945 
 Mackay model : 0.974 
 Octanol/air (Koa) model: 1 

 Atmospheric Oxidation (25 deg C) [AopWin v1.92]:
 Hydroxyl Radicals Reaction:
 OVERALL OH Rate Constant = 200.4080 E-12 cm3/molecule-sec
 Half-Life = 0.053 Days (12-hr day; 1.5E6 OH/cm3)
 Half-Life = 0.640 Hrs
 Ozone Reaction:
 No Ozone Reaction Estimation
 Fraction sorbed to airborne particulates (phi): 0.96 (Junge,Mackay)
 Note: the sorbed fraction may be resistant to atmospheric oxidation

 Soil Adsorption Coefficient (PCKOCWIN v1.66):
 Koc : 3.666E+004
 Log Koc: 4.564 

 Aqueous Base/Acid-Catalyzed Hydrolysis (25 deg C) [HYDROWIN v1.67]:
 Rate constants can NOT be estimated for this structure!

 Bioaccumulation Estimates from Log Kow (BCFWIN v2.17):
 Log BCF from regression-based method = 2.867 (BCF = 736.5)
 log Kow used: 4.63 (estimated)

 Volatilization from Water:
 Henry LC: 5.11E-012 atm-m3/mole (estimated by Bond SAR Method)
 Half-Life from Model River: 2.08E+008 hours (8.665E+006 days)
 Half-Life from Model Lake : 2.269E+009 hours (9.452E+007 days)

 Removal In Wastewater Treatment:
 Total removal: 62.65 percent
 Total biodegradation: 0.57 percent
 Total sludge adsorption: 62.08 percent
 Total to Air: 0.00 percent
 (using 10000 hr Bio P,A,S)

 Level III Fugacity Model:
 Mass Amount Half-Life Emissions
 (percent) (hr) (kg/hr)
 Air 0.000577 1.28 1000 
 Water 7.43 1.44e+003 1000 
 Soil 82.7 2.88e+003 1000 
 Sediment 9.91 1.3e+004 0 
 Persistence Time: 3.13e+003 hr




 

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