Basic Neurochemistry – Flashcards

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Definition of a NT
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1) Stored in a presynaptic vesicle 2) Released in a Ca-dependent manner 3) Capable of interacting with a membrane bound receptor to produce an effect
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Definition of a neuromodulator
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Quite often meets all the requirements for a NT -Might have slower or long lasting effects than a true NT-- really properties of the downstream signalling cascades, not the transmitter itself -Or some aspect of the definition of a NT might be unclear -Just know that sometimes the definition is unclear.
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Biosynthesis of AA derivative NTs
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CLEAR VESICLES Except ACh, the small molecule NTs are usually standard amino acids or derivatives -ENZYMES converting the AAs originate in nucleus -Post-translational modification in the cell body -Transported to terminals. At the terminals the NT biosynthetic reactions take place and packaged into vesicles -The AA precursors got into the neuron via uptake receptors on the terminal membrane
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Biosynthesis of peptide NTs
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DENSE-CORE VESICLES -come from cleavage of larger peptide precursors within the RER and Golgi. -packaged 1st into vesicles and then transported down to the axon terminal.
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Steps in presynaptic NT release
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1) AP depolarize presynaptic terminal 2) voltage gated Ca channels open and let Ca in 3) Fusion of vesicle with membrane -Postsynaptic response is directly proprotional to Ca conductance (Ga)
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What did Ramon y Cajal prove?
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Neurons are individual cells
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What did Loewi and Dale prove?
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ACh is a neurotransmitter. -Took 2 frogs hearts, stimulated vagus on one of them and it slowed down -Took the broth from that heart and bathed the second heart in it. -The other heart slowed down too, meaning there was something chemical in the broth that made it slow down. -due to hyperpolarizing effects of M2 mediated elevated K conductance. The BETA/GAMMA subunit is responsible for this, not the alpha subunit.
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EPSPs and IPSPs usually involve which ions?
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EPSP usually involves elevated Na conductances IPSPs usually involve elevated K and Cl conductances -there are always exceptions to the rules
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AP vs. EPSP or IPSP: which ones is graded?
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APs are not graded. They are all or none. -EPSPs or IPSPs can be graded. Increased activation from the presynaptic inputs yields larger post-synaptic potentials. -individual EPSPs are usually not enough to evoke an AP in the post-synaptic cell. They must be summated.
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Synaptic delay
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Time between the pre-synaptic neuron being depolarized and the EPSP onset Things that happen during Synaptic Delay: 1) Ca enters pre-synaptic nuron 2) Vesicle release 3) Transmitter accumulation and diffusion across synapse 4) Binding and activation of post-synaptic receptors
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Ionotropic vs. metabotropic transmission
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Ionotropic is usually fast -Metabotropic usually slow -Exception: GABAcR is ionotropic but slow -Fast or slow transmission is really a property of the receptor, not the NT
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Examples of fast receptors
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Mostly ionotropic 1) nACh 2)glutamate (AMPA/kainate receptors) 3) GABA A (inhibitory) 4) glycine
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Examples of slow receptors
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Mostly metabotropic w/ 2nd messengers 1) mACh 2) Metabotropic glutamate R 3) GABA B (inhibitory) 4) peptide transmitters (VIP, substance-P, enkephalin)
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Presynaptic autoreceptors
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Type of axo-axonic receptor. -Autoreceptor on that same terminal does negative feedback to stop release of NT. Certain receptors in the following classes may do this: -DA -5HT -GABA
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Presynaptic heteroreceptors
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Can also be axo-axonic. inhibits neuron that didn't originally produce the transmitter. -Examples: 5HT and Enkephalin
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Strucutre of G-protein coupled receptors
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Ex: NTs (catecholamines, serotonin), Peptide hormones (glucagon), Rhodopsin (Opsin) -7 transmembrane domains -Single subunit receptor (Dimers in some cases) -Coupled through intracellular loop to heterotrimeric G proteins.
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Mechanism of G-protein receptors
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-If no transmitter bound: alpha subunit stays bound to a GDP molecule -When NT binds, alpha subunit dissociates and binds GTP and goes off to start 2nd messenger cascade -Reset: alpha subunit has ATPase activity, NT dissociates from receptor
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Which G-protein subunit confers specificity?
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alpha subunit (except M2)
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Effect of Gs
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INCREASE adenylate cyclase
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Gi
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DECREASE adnylate cyclase
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Gq(p)
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INCREASE PLC
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Go
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INCREASE K and Ca channels
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Modes of g-protein operation
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1) affect ion channels (via g-gprotein, not directly) 2) start 2nd messenger system
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Some second messengers
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1) cAMP 2) DAG 3) IP3 4) Ca
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cAMP mechanism
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-Gs or G1 -cAMP from ATP by ADENYLYL CYCLASE -Target: -cyclic nucleotide-gated ion channels - PKA= cAMP-dependent protein kinase
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Cyclic nucleotide gated channels (CNG)
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-conduct Na, K, Ca fairly non-selectively when bound by cGMP and cAMP -Belong to family of voltage-gated ion channels even though they show very little voltage dependence -Found in retinal photoreceptors and olfactory sensory neurons. (mutations can can retinal degeneration or color blindness.)
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Achromatopsia
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Mutation in A and B subunits of CNG channel in retinal cones. -Causes color blindness
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How does cAMP activate PKA?
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-PKA is a tetramer in inactive state -PKA regulatory subunits bind 4 molecules of cAMP and dissociate to expose catalytic subunits. -catalytic subunits phosphorylate many other kinds of proteins
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Gp(q) mechanism
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Gq (p) activates PLC -PLC cleaves PIP2 into DAG and IP3 -DAG activates PKC -IP3 goes to ER to release Ca
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Mechanism of Ca as a 2nd messenger
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-comes from: 1) voltage gated channels 2) NMDA receptors 3) Endoplasmic Reticulum (ER) Targets: -PKC -Calmodulin Ca/Calmodulin-dependent protein kinase (CaMK)
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Calmodulin (CaM)
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-4 Ca binding sites per molecules -Complex of Ca and CaM regulates lots of enzymes like: -CaMK -Ca ATPase pump -Some subtypes of adenylyl cyclase and phosphodiesterases
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Synaptotagmin
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Ca sensor for NT release
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What are some substrates for neuronal protein kinases?
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1) Ion channels (K or Ca): modulate neuronal activity 2) Enzymes (Tyrosine hydroxylase): NT synthesis 3) Cytoskeletal proteins (Microtubule- associated proteins MAPs): Maintenence of neuronal structure 4) Transcription factors (cAMP response element binding protein CREB) : gene expression
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Dopamine Receptors and biochem effects
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D1-5 1) D1 and D5: INCREASE Adenylyl cyclase 2) D2,3,4: DECREASE adenylyl cyclase
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Norepineprine receptors and effects
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1) a1: INCREASE PLC 2) a2: DECREASE adenylyl cyclase 3) B: INCREASE Adenylyl cyclase
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Acetylcholine receptors and effects
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1) Nicotinic: Na/K conductance 2) Muscarinic: -m1,3,5: INCREASE PLC -m2,4: DECREASE adenylyl cyclase and G protein coupling to ion channel. (M2 beta/gamma K channels responsible for frog heart experiment, and M2- alpha unit in heart can directly activate Ca channels under some conditions)
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GABA receptors and effects
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1) GABAa: Cl conductance-- fast acting 2)GABAb:K conductance (g-protein coupled) could also do Ca conductance? 3)GABAc: Cl conducance --slow actin
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Glutamate:
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1) AMPA/Kainate: Na/K conductance 2) NMDA: NA,K, Ca conductance. Has ligand and voltage gated properties 3) Metabotropic: INCREASE PLC
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Agonist
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Any ligand that binds to a receptor and produces a physiological effect. Can include the endogenous or exogenous agonists
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Partial agonist
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Binds same site but lower effect than the full agonist at an equimolar concentration
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Inverse agonist
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Binds to the same receptor bu has action opposite to the antagonist
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Competitive Antagonist
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Displaces agonist from binding site. Produces no physiological effects by itself.
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Non-competitive antagonist
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Blocks action of the agonist at allosteric site. Doesn't prevent binding of agonist.
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Allosteric modulators
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Substances that act at regulatory sites to change the binding affinity of the ligand. Usually induces conformational change to make the receptor more or less likely to bind ligand. Ex: Benzos enhance channel conductance whenever GABA molecules actually become bound to the site.
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Synthesis of acetylcholine
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Catalyzed by CHOLINE ACETYLTRANSFERASE -Acetyl-CoA +Choline = acetylcholine
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Degradation reaction of acetylcholine
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Catalyzed by acetylcholinesteras -Acetylcholine = Acetate and choline
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Organophosphates
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Irreversible acetylcholinesterase inhibitors -Insecticides, biological warfare Symptoms: vasodilation, bradycardia, SLUD, bronchiolar constriction, miosis (pupillary constriction) convulsion, asphyxia. Antidote: Atropine (anticholinergic) Pralidoxime- facilitates cleavage of organophosphate from AChE at the esteric serine residue.
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What enzyme packages ACh into vesicles?
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Vesicular ACh transporter
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Nicotinic vs. Muscarinic ACh receptors
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Nicotinic: -Agonist: nicotine -Antag: Curare -Location: NMJ and brain -Ligand-gated ion channel -Fast EPSP (no IPSP) Muscarinic: -Agonist: Muscarine -Antag: Atropine -Location: Most prominent cholinergic receptor in brain --G1, Gp/q coupled ion channels. -Slow EPSP or slow IPSP
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Synthesis of catecholamines
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1) Tyrosine --> L-DOPA (Tyrosine hydroxylase) --needs O2, Fe, pteridine cofactor. RATE LIMITING CYTOSOLIC ENZYME 2) L-DOPA--> Dopamine (DOPA Decarboxylase)-- needs pyridoxal phosphate. Cystolic enzyme 3) Dopamine--> Norepinephrine (Dopamine-B-hydroxylase)- needs O2 and Cu, located in synaptic granules 3) NE--> epinephrine (Phenylethanolamine-N-methyltrasnferase) needs S-adenosylmethionine. CYTOPLASMIC
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Monoamine oxidase (MAO)
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NE and Epi use MAO-A DA can use MAO-A or B -Found in outer mitochondiral membrane of PRESYNAPTIC neuron. -Oxidative deamination of catechols into an ALDEHYDE AND AMMONIA.
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COMT
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requires Mg. uses S-adenosyl methionine to add methyl group to catecholamine. -Usually found on POSTsynaptic membrane -Produces HVA, MHPG, VMA
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Haloperidol MOA
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D2 receptor anatgonist
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Reserpine MOA
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Antihypertensive, uncommon antipsychotic -blocks NT reuptake into vesicles
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TCAs, MOA
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NE and 5HT reuptake inhibitor
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Amphetamines MOA
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-May inhibit MAO? -DAT pump: Inhibits NE and DA reuptake into presynaptic neuron (actually pumps it out) -VMAT pump: Bumps NE and DA out of vesicles and increases their secretion into cleft. CAUTION CONCURRENT MAOI CAN CAUSE LETHAL HTN AND HYPERTHERMIA
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Cocaine MOA
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Blocks DAT dopamine transporter at extracellular surface so more DA stays in synapse
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Serotonin biosynthesis
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Tryptophan==5-hydroxytryptophan== 5HT via Tryptophan hydroxylase and aromatic L-AA Decarboxylase
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Serotonin degradation
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MAO-A into 5-HIAA, which is excreted in urine.
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Serotonin pharmacology
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-sleep, wakefulness -Pain, antinociceptive pathway
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GABA biosynthesis
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Uses glutamic acid decarboxylase. -GABA is an AA with no role in intermediary metabolism
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GABA degradation
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1) GABA-T (GABA transaminase) 2) SSADH (succinic semialdehyde dehydrogenase) End product: SUCCINIC ACID
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What is the GABA shunt?
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When the neuron makes GABA, it has to use up an alpha-KG. The end breakdown product of GABA, succinic acid, can reenter the TCA cycle, but doesn't provide as much energy. TCA: 4 ATP (one was from GTP) GABA shunt: 3 ATP THE NEURON USES 1 ATP TO MAKE GABA!
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GABA-A receptor
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Ionotropic Cl channel. -Benzos: not GABA agonist-- bind allosteric site to increase receptor affinity for GABA. EtOH, barbiturates, some steroids can do this too. -Other drugs: anesthetics, picrotoxins Anatagonist: BICUCULLINE
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GABA-B receptor
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Metabotropic dimeric receptros. -One subunit has GABA binding site and the other has allosteric regulatory site -Coupled to K (and possibly Ca channels) via G proteins
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GABA-C Receptors
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Ligand-gated Cl channels but with SLOW kinetics (compared to GABA-A -Not sensitive to barbs and benzos that characteristically affect the GABA-A channels
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Glycine biosynthesis
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Not an essential AA -Made from serine via SERINE HYDROXYMETHYLTRANSFERASE plus pyridoxal phosphate
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GABA vs Glycine
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1) GABA: from glutamate, prominent role in brain 2) Glycine: from serine, also inhibitory. Prominent role in spinal cord (Renshaw spinal interneurons) Ligand gated Cl channel, blocked by STRYCHNINE -Glycine can also modulate at glutamine synapses by interacting with the glutamate receptors, but this is unrelated to its actions as an inhibitory NT
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Glutamate
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Major excitatory NT in brain -can be excitotoxic -Receptors: AMPA, Kainate, NMDA, Metabotropic mGluR1 to 5
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NMDA receptor characteristics
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-Activates voltage gated ion channel gated by Mg -At rest the Mg sits in the pore because of electrostatic interaction. -If the Mg is sitting in the NMDA receptor, glutamate can't activate. (It can activate the AMPA receptor though) -NMDA receptor different from other glutR because it lets Ca through in addition to monovalent ions -NMDA regulated by GLYCINE
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How does the NMDA receptor open?
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The AMPA channel has to open first -Strong depolarization of the postsynaptic membrane can eject the Mg from the pore. -If glutamate is still released during continued presynaptic firing, both AMPA and NMDA will be activated. This lets Ca through along with the monovalent ions into the postsynaptic membrane
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Long Term Potentiation (LTP)
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Defined as "Long lasting increase in synaptic strength" -Activation of NMDA receptor essential for LTP -LTP associated with memory formation and associative learning, which has been best characterized in the hippocampus.
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What is the basis for LTP?
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1) Influx of Ca through NMDA receptor channel 2) Ca-dependent processes in post-synaptic cell activated -CaMK and PKC activated, produce long term changes in the efficiency of the synapse 3) Increased numbers of AMPA receptors in the postsynaptic membrane 4) Phosphorylation (activation) of transcriptions factor like CREB to regulate gene transcription, incr expression of proteins that modify synaptic structure. =increased NUMBER AND EFFICACY OF AMPA CHANNELS
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How do peptides interact with the nervous system?
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1) Neurosecretion 2) Regulation of Anterior Pituitary 3) Neurotransmitters
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Neurosecretion
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Neuron makes peptide and stores it in vesicles at the axon terminal. -When stimulated, it releases peptides into BLOODSTREAM. (like Oxytocin and Vasopressin in posterior pituitary)
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Regulation of Anterior Pituitary
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Hypothalamic releasing factors are all peptides except for one
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Peptide neurotransmitters
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Can act as NTs in the CNS. The synthesis is different from classic NTs like acetylcholine. -Synthesis of peptide NTs occurs in neuronal cell body. Then it's processed and transported to the presynaptic terminal for vesicular storage and release.
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Substance-P
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ID in 1931 on basis of ACh-like SM contraction -high concentrations in areas of pain regulation: 1) spinal cord 2)trigeminal nucleus 3)Hypothalamus 4) basal ganglia
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How do we know substance P is a NT?
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Main evidence comes form role in primary sensory neurons -Located in DRG, neuron synapses on Dorsal horn neuron and goes to thalamus. -Ligation studies were done to block axonal transport to terminals within the spinal cord -Exogenous substance P applied to dorsal horn results in same effect as if you stimulated the DRG substance P neuron directly
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How do we control pain via the substance P pathway?
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Serotonin neuron can turn on inhibitory enkephalin neuron to inhibit Substance P from DRG. -Sometimes the serotonin neuron can directly inhibit the substance P neuron
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Classes of opiod peptides
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1)Enkephalins: Met and Leu enkephalins--pain inhibition 2) Beta-endorphin: for affective state, neuronal sensitivity, neuroendocrin regulation. Actually the most potent opiod in vivo, but probably due more to its stability and long half life 3) Dynorphins: from prodynorphin, selective for K-RECEPTOR. All over CNS esp hypothalamus, brainstem, spinal cord. Modulates pain, addiction, tolerance, withdrawal of cocaine. -In hypothalmus and pituitary help with homeostasis , appetite control, circadian rythems, temp regulation
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How does dynoprhin mediate tolerance to cocain and depression?
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Activates PKA and CREB to elevate dynorphin expression in the nucleus accumbens, where it blocks DA release. this counteracts actions of cocaine and leads to tolerance. -Similar mechanism has been linked to depression.
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Synthesis of beta-endorphin
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POMC in pituitary gland. Processing of POMC is tissue specific -Cleavage at basic amino acids into gammy liptropin and beta endorphin -(Alt cleavage of POMC can make ACTH) -Packaged into vesicle in trans-golgi. DENSE CORE -attached to neurotubules, moved by kinesin motor to axon terminal -vesicles transferred to actin neurofilaments for final transfer to active zones at synapse
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Synthesis of Enkephalins
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From PROENKEPHALIN A -(there is a met-enk sequence within POMC, but there's no cleavage signal so you can't make it from POMC. There's no leu-enk in POMC at all. also met-enk is in pain area while beta endorphin is in hypothalamus) -Each proenkephalin makes 5 met-enk and 1 leu-enk
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Synthesis of dynorphins
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From pro-dynorphin. -Can make dynoprhin A, B, AB, and alpha-neo-endorphin (total of 35 different peptides) -pro-dynorphin has parts of leu-enk, but none are cleaved to form it. -Prodynorphin mRNA is upregulated in rats after cocain administration
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Characteristics of opiod receptors
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all are G-protein coupled -Inhibit Adenylate cyclase, increase hyperolarization through interaction with K channels -Decrease calcium influx through Ca channels -Basis of morphine pain path originating in dorsal horm
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Naloxone
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competitive anatgonist -high affinity for MU receptor in CNS. (less K and D) -blockade= withdrawal symptoms, used in overdose
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Naltrexone
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competitive antagonist -MU and KAPPA receptors (lesser extent delta) -manage opioid and EtOH addiction. -anatgonizes endogenous opioids like tetrahydropapaveroline, which has increase production when you drink alcohol
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Delta receptor (OP1) d1, d2
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-analgesia, antidepressent, physical dependence 1) Pontine nuclei 2) amygdala 3)olfactory bulbs 4) deep cortex 5) peripheral sensory neurons
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Kappa receptor (OP2) k1, k2, k3
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-analgesia, sedation, miosis, inhibit ADH release, dysphoria 1) hypothalamus 2) PAG 3) claustrum 4) spinal cord 5) substantia gelatinosa 6) peripheral sensory neurons
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Mu receptors (OP3) m1, m2, m3
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Mu 1: analgesia, physical dependence Mu2: resp depression, miosis, euphoria, constipation, physical dependence Mu3: unknown 1) cortex (laminae III and IV) 2) thalamus 3) striosomes 4) PAG 5) spinal cord 6) substantia gelatinosa 7) peripheral sensory neurons 8) intestines
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Nociception receptor (OP4)
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-anxiety, depression, appetitie, development of tolerance to Mu agonists 1) cortex 2) amygdala 3) septal nuclei 4) Habenula 5) hypothalamus 6) spinal cord
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Describe mechanism of co-localization of small molecule NTs and peptide NTs
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-Can co-localize in same neuron for flexible signalling. -Small NTs release with low levels of firing and Ca, dense peptide vesicle release with more stimulation. might have to do with geometry of vesicular trafficking along cytoskeleton.
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Parkinsons
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Loss of Da in nigral-striatal system
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Schizophrenia
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Too much Da in mesolimbic and mesocortical systems
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Alzheimer's disease
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No ACh in nucleus basalis
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Huntington's chorea
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No GABA and ACh in striatum
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Myasthenia gravis
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Autoimmune targeting AChR at NMJ (Gain of function)
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