ADL HW 01 – Flashcards
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Which type of research technique was used to track newly synthesized RNA within a eukaryotic cell?
A. pulse-chase
B. band shift assay
C. in situ hybridization
D. DNA footprint protection assay
E. Southern blotting
answer
A. pulse-chase
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You wish to create a mutation in which you prevent access of RNA polymerase to the gene. Which region of a gene would you target?
A. coding region
B. stop codon
C. terminator sequence
D. promoter sequence
E. start codon
answer
D. promoter sequence
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A gene has acquired a mutation in which the protein product has an "extra" 50 amino acids at the end. Which region of the gene was likely mutated?
A. coding region
B. start codon
C. promoter sequence
D. stop codon
E. terminator sequence
answer
D. stop codon
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Which region(s) of a gene are not found within the mRNA transcript?
A. promoter region
B. stop codon
C. termination region
D. promoter and termination regions
E. promoter and stop codon
answer
A. promoter region
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Which of the following initially determines which DNA strand is the template strand, and therefore in which direction RNA polymerase II moves along the DNA?
A. which of the two strands of DNA carries the RNA primer
B. the position of the gene's promoter on the chromosome
C. the location along the chromosome where the double stranded DNA unwinds
D. the specific sequence of bases along the DNA strands
E. the location of specific proteins (transcription factors) that bind to the DNA
answer
D. the specific sequence of bases along the DNA strands
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Which three statements correctly describe the processing that takes place before a mature mRNA exits the nucleus?
-Noncoding sequences called introns are spliced out by molecular complexes called spliceosomes.
-A cap consisting of a modified guanine nucleotide is added to the 5' end of the pre-mRNA.
-Coding sequences called exons are spliced out by ribosomes.
-A translation stop codon is added at the 3' end of the pre-mRNA.
-A poly-A tail (50-250 adenine nucleotides) is added to the 3' end of the pre-mRNA.
answer
1. Noncoding sequences called introns are spliced out by molecular complexes called spliceosomes.
2. A cap consisting of a modified guanine nucleotide is added to the 5' end of the pre-mRNA.
3. A poly-A tail (50-250 adenine nucleotides) is added to the 3' end of the pre-mRNA.
After all these steps have taken place the mRNA is complete and capable of exiting the nucleus. It can now participate in translation in the cytoplasm.
question
Which of the following lists steps of mRNA production in eukaryotes in the correct order?
A. 5' cap addition, addition of poly-A tail, exon splicing, passage through nuclear membrane, transcription
B. Transcription, addition of poly-A tail, 5' cap addition, exon splicing, passage through nuclear membrane
C. Transcription, 5' cap addition, addition of poly-A tail, passage through nuclear membrane, exon splicing
D. Transcription, 5' cap addition, addition of poly-A tail, exon splicing, passage through nuclear membrane.
answer
D. Transcription, 5' cap addition, addition of poly-A tail, exon splicing, passage through nuclear membrane.
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Which of the following is characteristic of transcription in eukaryotes but not in prokaryotes?
A. A 3' untranslated trailer sequence
B. Exon splicing
C. A 5' untranslated leader sequence
D. A single transcript may be transcribed and translated simultaneously
answer
B. Exon splicing
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Which of the following best describe(s) the function of the 5' mRNA cap?
-Termination of transcription
-To provide a binding site for poly(A) polymerase
-It provides a site for ribosome binding in the cytoplasm
-To protect the transcript from degradation
answer
1. It provides a site for ribosome binding in the cytoplasm
2. To protect the transcript from degradation
The 5' cap is essential for recognition of the mRNA by ribosomes in the cytoplasm
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You want to design a drug that prevents transcription of mRNAs but does not affect transcription of other RNAs. What enzyme would you target?
A. ribozyme
B. RNA polymerase III
C. methyl transferase
D. RNA polymerase I
E. RNA polymerase II
answer
E. RNA polymerase II
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*Bacterial transcription, Step 1: Promoter recognition*
answer
RNA polymerase is a holoenzyme composed of a five-subunit core enzyme and a sigma subunit; located immediately upstream of the starting point of transcription (+1 nucleotide of the gene); includes two short sequences, the -10 and -35 consensus sequences, which are recognized by the sigma subunit.
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*Bacterial transcription, Step 2: Chain initiation*
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RNA polymerase holoenzyme first binds loosely to the promoter sequence and then binds tightly to it to form the closed promoter complex; holoenzyme then initiates RNA synthesis at the +1 nucleotide of the template strand.
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*Bacterial transcription, Step 3: Chain elongation*
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RNA-coding region is the portion of the gene that is transcribed into RNA. RNA polymerase synthesizes RNA in the 5'--->3' direction as it moves along the template strand of DNA. The nucleotide sequence of the RNA transcript is complementary to that of the template strand and the same as that of the coding strand, except that the transcript contains U instead of T.
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*Bacterial transcription, Step 4: Chain termination*
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Most bacterial genes have a pair of inverted repeats and a polyadenine sequence located downstream of the RNA-coding region. Transcription of the inverted repeats produces an RNA transcript that folds into a stem-loop structure. Transcription of the polyadenine sequence produces a poly-U sequence in the RNA transcript, which facilitates release of the transcript from the DNA.
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Order of events during eukaryotic transcription involving RNA polymerase II
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1. TFIID binds to the TATA box.
2. TFIIA, TFIIB, TFIIF, and RNA pol II bind.
3. TFIIE and TFIIH bind.
4. Synthesis of the pre-mRNA begins at the +1 nucleotide.
5. A 5' cap is added to the pre-mRNA.
6. Spliceosome complexes carry out intron splicing.
7. A poly-A tail is added to the pre-mRNA.
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Pre-mRNA splicing in eukaryotes
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If a mutation alters a splicing signal sequence of an intron, that intron will not be removed accurately during the splicing reaction. This will result in the production of an abnormally spliced mature mRNA.
Mutations in promoter sequences will affect transcription initiation and are likely to result in no mRNA being produced.
question
Which of the following is a characteristic of RNA splicing in eukaryotes?
A. Exon/intron boundaries are typically characterized by a 5' GU splice junction and a 3' AG splice junction
B. It involves removal of introns from a gene sequence followed by transcription and subsequent splicing of exons
C. After splicing occurs, the U1, U2, U5, U6 snRNP complex removes remaining exons for degradation
D. It involves recognition of sequence-specific intron/exon boundary sites by cytoplasmic proteins
answer
A. Exon/intron boundaries are typically characterized by a 5' GU splice junction and a 3' AG splice junction.
These splice junctions are recognized by the spliceosome so that accurate removal of introns is possible.
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A snRNP is best described as ________.
A. short mRNA transcripts combined with nuclear protein complexes
B. small RNAs associated with protein complexes in the nucleus
C. the loop structure that forms when two exons are brought into close proximity
D. a specific sequence of 7 bases in the mRNA transcript
answer
B. small RNAs associated with protein complexes in the nucleus.
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Which of the following is most likely attributable to a base substitution at a 5' splice junction?
A. Failure of the U2 snRNP to bind the transcript
B. A longer than usual final transcript
C. A shorter than usual final transcript
D. An amino acid substitution in the final protein product
answer
B. A longer than usual final transcript
question
Select the properties shared by RNA polymerase and DNA polymerase
answer
-Dependent on a DNA sequence template
-Catalyzes phosphodiester bond formation
-Polymerizes nucleotides in a 5'-to-3' direction